Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17935

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17925 and SGL_RS17930 are separated by 220 nucleotidesSGL_RS17930 and SGL_RS17935 are separated by 66 nucleotidesSGL_RS17935 and SGL_RS17940 are separated by 128 nucleotidesSGL_RS17940 and SGL_RS17945 are separated by 15 nucleotides SGL_RS17925: SGL_RS17925 - hypothetical protein, at 3,476,059 to 3,476,595 _RS17925 SGL_RS17930: SGL_RS17930 - fimbria/pilus periplasmic chaperone, at 3,476,816 to 3,477,484 _RS17930 SGL_RS17935: SGL_RS17935 - hypothetical protein, at 3,477,551 to 3,477,754 _RS17935 SGL_RS17940: SGL_RS17940 - hypothetical protein, at 3,477,883 to 3,478,116 _RS17940 SGL_RS17945: SGL_RS17945 - DUF2887 domain-containing protein, at 3,478,132 to 3,479,034 _RS17945 Position (kb) 3477 3478Strain fitness (log2 ratio) -1 0 1at 3476.626 kb on + strandat 3476.800 kb on - strandat 3476.833 kb on - strandat 3476.945 kb on - strand, within SGL_RS17930at 3476.950 kb on + strand, within SGL_RS17930at 3476.950 kb on + strand, within SGL_RS17930at 3476.950 kb on + strand, within SGL_RS17930at 3477.018 kb on + strand, within SGL_RS17930at 3477.132 kb on + strand, within SGL_RS17930at 3477.192 kb on + strand, within SGL_RS17930at 3477.202 kb on - strand, within SGL_RS17930at 3477.237 kb on + strand, within SGL_RS17930at 3477.302 kb on - strand, within SGL_RS17930at 3477.635 kb on + strand, within SGL_RS17935at 3477.680 kb on + strand, within SGL_RS17935at 3477.774 kb on - strandat 3477.979 kb on + strand, within SGL_RS17940at 3478.153 kb on - strandat 3478.282 kb on - strand, within SGL_RS17945at 3478.395 kb on + strand, within SGL_RS17945at 3478.420 kb on - strand, within SGL_RS17945at 3478.555 kb on + strand, within SGL_RS17945at 3478.615 kb on + strand, within SGL_RS17945at 3478.655 kb on + strand, within SGL_RS17945at 3478.667 kb on - strand, within SGL_RS17945at 3478.741 kb on + strand, within SGL_RS17945

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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3,476,626 + +0.0
3,476,800 - -0.4
3,476,833 - -0.1
3,476,945 - SGL_RS17930 0.19 +0.1
3,476,950 + SGL_RS17930 0.20 -0.2
3,476,950 + SGL_RS17930 0.20 -0.9
3,476,950 + SGL_RS17930 0.20 -0.2
3,477,018 + SGL_RS17930 0.30 +0.3
3,477,132 + SGL_RS17930 0.47 +0.3
3,477,192 + SGL_RS17930 0.56 +0.1
3,477,202 - SGL_RS17930 0.58 -0.3
3,477,237 + SGL_RS17930 0.63 +0.1
3,477,302 - SGL_RS17930 0.73 -0.9
3,477,635 + SGL_RS17935 0.41 -0.8
3,477,680 + SGL_RS17935 0.63 +0.8
3,477,774 - -0.3
3,477,979 + SGL_RS17940 0.41 +0.2
3,478,153 - +0.2
3,478,282 - SGL_RS17945 0.17 +1.0
3,478,395 + SGL_RS17945 0.29 +0.1
3,478,420 - SGL_RS17945 0.32 -0.4
3,478,555 + SGL_RS17945 0.47 -0.1
3,478,615 + SGL_RS17945 0.53 -0.2
3,478,655 + SGL_RS17945 0.58 +0.2
3,478,667 - SGL_RS17945 0.59 +0.2
3,478,741 + SGL_RS17945 0.67 +0.2

Or see this region's nucleotide sequence