Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17325

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17315 and SGL_RS17320 are separated by 36 nucleotidesSGL_RS17320 and SGL_RS17325 overlap by 4 nucleotidesSGL_RS17325 and SGL_RS17330 are separated by 297 nucleotides SGL_RS17315: SGL_RS17315 - class I SAM-dependent methyltransferase, at 3,341,166 to 3,341,843 _RS17315 SGL_RS17320: SGL_RS17320 - hypothetical protein, at 3,341,880 to 3,342,128 _RS17320 SGL_RS17325: SGL_RS17325 - putative toxin-antitoxin system toxin component, PIN family, at 3,342,125 to 3,342,559 _RS17325 SGL_RS17330: SGL_RS17330 - biosynthetic arginine decarboxylase, at 3,342,857 to 3,344,944 _RS17330 Position (kb) 3342 3343Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3341.275 kb on - strand, within SGL_RS17315at 3341.482 kb on - strand, within SGL_RS17315at 3341.482 kb on - strand, within SGL_RS17315at 3341.506 kb on - strand, within SGL_RS17315at 3341.525 kb on + strand, within SGL_RS17315at 3341.586 kb on + strand, within SGL_RS17315at 3341.655 kb on + strand, within SGL_RS17315at 3341.768 kb on - strand, within SGL_RS17315at 3342.219 kb on - strand, within SGL_RS17325at 3342.254 kb on + strand, within SGL_RS17325at 3342.763 kb on + strandat 3342.840 kb on - strandat 3342.918 kb on + strandat 3342.918 kb on + strandat 3342.974 kb on + strandat 3342.988 kb on - strandat 3342.993 kb on + strandat 3343.003 kb on - strandat 3343.095 kb on + strand, within SGL_RS17330at 3343.131 kb on - strand, within SGL_RS17330at 3343.361 kb on - strand, within SGL_RS17330at 3343.400 kb on - strand, within SGL_RS17330at 3343.402 kb on - strand, within SGL_RS17330at 3343.407 kb on - strand, within SGL_RS17330at 3343.412 kb on - strand, within SGL_RS17330

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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3,341,275 - SGL_RS17315 0.16 -0.9
3,341,482 - SGL_RS17315 0.47 -0.1
3,341,482 - SGL_RS17315 0.47 -1.2
3,341,506 - SGL_RS17315 0.50 +0.1
3,341,525 + SGL_RS17315 0.53 -1.2
3,341,586 + SGL_RS17315 0.62 +0.1
3,341,655 + SGL_RS17315 0.72 +0.2
3,341,768 - SGL_RS17315 0.89 -0.9
3,342,219 - SGL_RS17325 0.22 +0.2
3,342,254 + SGL_RS17325 0.30 +0.7
3,342,763 + -0.1
3,342,840 - +0.2
3,342,918 + -3.4
3,342,918 + -2.6
3,342,974 + -0.2
3,342,988 - -1.5
3,342,993 + -4.0
3,343,003 - -3.4
3,343,095 + SGL_RS17330 0.11 -3.8
3,343,131 - SGL_RS17330 0.13 -2.7
3,343,361 - SGL_RS17330 0.24 -2.9
3,343,400 - SGL_RS17330 0.26 -1.9
3,343,402 - SGL_RS17330 0.26 -1.5
3,343,407 - SGL_RS17330 0.26 -4.0
3,343,412 - SGL_RS17330 0.27 -1.7

Or see this region's nucleotide sequence