Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17205

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17200 and SGL_RS17205 are separated by 183 nucleotidesSGL_RS17205 and SGL_RS17210 are separated by 627 nucleotidesSGL_RS17210 and SGL_RS17215 are separated by 107 nucleotides SGL_RS17200: SGL_RS17200 - elongation factor G variant FusB, at 3,313,667 to 3,315,754 _RS17200 SGL_RS17205: SGL_RS17205 - radical SAM protein, at 3,315,938 to 3,316,735 _RS17205 SGL_RS17210: SGL_RS17210 - NifU family protein, at 3,317,363 to 3,317,593 _RS17210 SGL_RS17215: SGL_RS17215 - ketol-acid reductoisomerase, at 3,317,701 to 3,318,696 _RS17215 Position (kb) 3315 3316 3317Strain fitness (log2 ratio) -1 0 1at 3315.832 kb on + strandat 3315.846 kb on + strandat 3315.890 kb on - strandat 3316.161 kb on - strand, within SGL_RS17205at 3316.296 kb on - strand, within SGL_RS17205at 3316.701 kb on + strandat 3316.772 kb on - strandat 3316.878 kb on + strandat 3316.946 kb on + strandat 3317.042 kb on - strandat 3317.101 kb on + strandat 3317.341 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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3,315,832 + +0.5
3,315,846 + +0.2
3,315,890 - +0.5
3,316,161 - SGL_RS17205 0.28 -0.1
3,316,296 - SGL_RS17205 0.45 +0.8
3,316,701 + +0.3
3,316,772 - +0.5
3,316,878 + -0.4
3,316,946 + -0.4
3,317,042 - +0.3
3,317,101 + +0.1
3,317,341 + +0.1

Or see this region's nucleotide sequence