Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17070

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17060 and SGL_RS17065 are separated by 134 nucleotidesSGL_RS17065 and SGL_RS17070 are separated by 191 nucleotidesSGL_RS17070 and SGL_RS17075 are separated by 60 nucleotidesSGL_RS17075 and SGL_RS17080 are separated by 117 nucleotides SGL_RS17060: SGL_RS17060 - hypothetical protein, at 3,281,954 to 3,282,307 _RS17060 SGL_RS17065: SGL_RS17065 - bacterioferritin, at 3,282,442 to 3,282,912 _RS17065 SGL_RS17070: SGL_RS17070 - DUF3146 family protein, at 3,283,104 to 3,283,406 _RS17070 SGL_RS17075: SGL_RS17075 - recombination mediator RecR, at 3,283,467 to 3,284,165 _RS17075 SGL_RS17080: SGL_RS17080 - hypothetical protein, at 3,284,283 to 3,284,810 _RS17080 Position (kb) 3283 3284Strain fitness (log2 ratio) -1 0 1at 3282.126 kb on - strand, within SGL_RS17060at 3282.330 kb on - strandat 3282.342 kb on - strandat 3282.536 kb on - strand, within SGL_RS17065at 3282.574 kb on + strand, within SGL_RS17065at 3282.616 kb on + strand, within SGL_RS17065at 3282.633 kb on + strand, within SGL_RS17065at 3282.889 kb on - strandat 3283.099 kb on - strandat 3283.303 kb on - strand, within SGL_RS17070at 3283.494 kb on + strandat 3284.376 kb on - strand, within SGL_RS17080

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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3,282,126 - SGL_RS17060 0.49 -0.4
3,282,330 - +0.3
3,282,342 - +0.5
3,282,536 - SGL_RS17065 0.20 +0.3
3,282,574 + SGL_RS17065 0.28 -0.3
3,282,616 + SGL_RS17065 0.37 +0.2
3,282,633 + SGL_RS17065 0.41 -0.5
3,282,889 - -0.1
3,283,099 - -0.2
3,283,303 - SGL_RS17070 0.66 +0.4
3,283,494 + -0.0
3,284,376 - SGL_RS17080 0.18 -0.1

Or see this region's nucleotide sequence