Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16570

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16565 and SGL_RS16570 are separated by 62 nucleotidesSGL_RS16570 and SGL_RS16575 are separated by 110 nucleotides SGL_RS16565: SGL_RS16565 - CmpA/NrtA family ABC transporter substrate-binding protein, at 3,169,054 to 3,170,412 _RS16565 SGL_RS16570: SGL_RS16570 - nitrate ABC transporter permease, at 3,170,475 to 3,171,317 _RS16570 SGL_RS16575: SGL_RS16575 - iron uptake porin, at 3,171,428 to 3,173,158 _RS16575 Position (kb) 3170 3171 3172Strain fitness (log2 ratio) -1 0 1at 3169.560 kb on + strand, within SGL_RS16565at 3169.597 kb on + strand, within SGL_RS16565at 3169.675 kb on - strand, within SGL_RS16565at 3169.687 kb on + strand, within SGL_RS16565at 3169.735 kb on + strand, within SGL_RS16565at 3169.735 kb on + strand, within SGL_RS16565at 3169.743 kb on - strand, within SGL_RS16565at 3169.819 kb on - strand, within SGL_RS16565at 3170.041 kb on + strand, within SGL_RS16565at 3170.511 kb on + strandat 3170.516 kb on + strandat 3170.687 kb on - strand, within SGL_RS16570at 3170.760 kb on + strand, within SGL_RS16570at 3170.768 kb on - strand, within SGL_RS16570at 3170.768 kb on - strand, within SGL_RS16570at 3170.768 kb on - strand, within SGL_RS16570at 3170.815 kb on + strand, within SGL_RS16570at 3170.817 kb on + strand, within SGL_RS16570at 3171.476 kb on + strandat 3171.502 kb on - strandat 3171.567 kb on - strandat 3171.605 kb on - strand, within SGL_RS16575at 3171.729 kb on - strand, within SGL_RS16575at 3171.757 kb on - strand, within SGL_RS16575at 3171.863 kb on + strand, within SGL_RS16575at 3171.879 kb on - strand, within SGL_RS16575at 3171.933 kb on + strand, within SGL_RS16575at 3171.941 kb on - strand, within SGL_RS16575at 3172.022 kb on + strand, within SGL_RS16575at 3172.032 kb on + strand, within SGL_RS16575at 3172.040 kb on - strand, within SGL_RS16575at 3172.044 kb on + strand, within SGL_RS16575at 3172.265 kb on - strand, within SGL_RS16575at 3172.284 kb on - strand, within SGL_RS16575

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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3,169,560 + SGL_RS16565 0.37 +0.3
3,169,597 + SGL_RS16565 0.40 -0.4
3,169,675 - SGL_RS16565 0.46 +0.7
3,169,687 + SGL_RS16565 0.47 -0.1
3,169,735 + SGL_RS16565 0.50 +0.3
3,169,735 + SGL_RS16565 0.50 -0.3
3,169,743 - SGL_RS16565 0.51 -0.0
3,169,819 - SGL_RS16565 0.56 +0.0
3,170,041 + SGL_RS16565 0.73 -0.1
3,170,511 + -0.1
3,170,516 + +0.3
3,170,687 - SGL_RS16570 0.25 +0.6
3,170,760 + SGL_RS16570 0.34 -0.1
3,170,768 - SGL_RS16570 0.35 +0.4
3,170,768 - SGL_RS16570 0.35 +0.7
3,170,768 - SGL_RS16570 0.35 +0.0
3,170,815 + SGL_RS16570 0.40 +0.1
3,170,817 + SGL_RS16570 0.41 +0.1
3,171,476 + -0.0
3,171,502 - -0.0
3,171,567 - +0.4
3,171,605 - SGL_RS16575 0.10 -0.4
3,171,729 - SGL_RS16575 0.17 +0.5
3,171,757 - SGL_RS16575 0.19 +0.2
3,171,863 + SGL_RS16575 0.25 -0.0
3,171,879 - SGL_RS16575 0.26 +1.0
3,171,933 + SGL_RS16575 0.29 -0.0
3,171,941 - SGL_RS16575 0.30 -0.2
3,172,022 + SGL_RS16575 0.34 +0.3
3,172,032 + SGL_RS16575 0.35 +0.2
3,172,040 - SGL_RS16575 0.35 +0.3
3,172,044 + SGL_RS16575 0.36 -0.2
3,172,265 - SGL_RS16575 0.48 -0.2
3,172,284 - SGL_RS16575 0.49 +0.2

Or see this region's nucleotide sequence