Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14555

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS14550 and SGL_RS14555 are separated by 36 nucleotidesSGL_RS14555 and SGL_RS14560 are separated by 26 nucleotides SGL_RS14550: SGL_RS14550 - competence/damage-inducible protein A, at 2,718,963 to 2,720,213 _RS14550 SGL_RS14555: SGL_RS14555 - YraN family protein, at 2,720,250 to 2,720,702 _RS14555 SGL_RS14560: SGL_RS14560 - hypothetical protein, at 2,720,729 to 2,722,234 _RS14560 Position (kb) 2720 2721Strain fitness (log2 ratio) -3 -2 -1 0 1at 2719.525 kb on - strand, within SGL_RS14550at 2719.600 kb on - strand, within SGL_RS14550at 2720.085 kb on + strand, within SGL_RS14550at 2720.362 kb on + strand, within SGL_RS14555at 2720.370 kb on - strand, within SGL_RS14555at 2720.494 kb on - strand, within SGL_RS14555at 2720.560 kb on - strand, within SGL_RS14555at 2720.620 kb on - strand, within SGL_RS14555at 2720.705 kb on - strandat 2720.776 kb on + strandat 2720.784 kb on - strandat 2720.784 kb on - strandat 2720.875 kb on + strandat 2720.920 kb on + strand, within SGL_RS14560at 2721.144 kb on - strand, within SGL_RS14560at 2721.161 kb on + strand, within SGL_RS14560at 2721.257 kb on - strand, within SGL_RS14560at 2721.622 kb on + strand, within SGL_RS14560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
remove
2,719,525 - SGL_RS14550 0.45 -1.6
2,719,600 - SGL_RS14550 0.51 +0.1
2,720,085 + SGL_RS14550 0.90 +0.3
2,720,362 + SGL_RS14555 0.25 +1.1
2,720,370 - SGL_RS14555 0.26 +0.0
2,720,494 - SGL_RS14555 0.54 +0.0
2,720,560 - SGL_RS14555 0.68 +0.3
2,720,620 - SGL_RS14555 0.82 +0.7
2,720,705 - -0.1
2,720,776 + +0.0
2,720,784 - -1.2
2,720,784 - +0.2
2,720,875 + +0.0
2,720,920 + SGL_RS14560 0.13 -0.5
2,721,144 - SGL_RS14560 0.28 -2.8
2,721,161 + SGL_RS14560 0.29 -0.9
2,721,257 - SGL_RS14560 0.35 -1.5
2,721,622 + SGL_RS14560 0.59 -0.1

Or see this region's nucleotide sequence