Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13740 and SGL_RS13745 are separated by 35 nucleotides SGL_RS13745 and SGL_RS13750 are separated by 9 nucleotides SGL_RS13750 and SGL_RS13755 are separated by 112 nucleotides SGL_RS13755 and SGL_RS13760 are separated by 156 nucleotides SGL_RS13760 and SGL_RS13765 are separated by 172 nucleotides
SGL_RS13740: SGL_RS13740 - carbon dioxide-concentrating mechanism protein, at 2,550,753 to 2,551,646
_RS13740
SGL_RS13745: SGL_RS13745 - PIN domain-containing protein, at 2,551,682 to 2,552,167
_RS13745
SGL_RS13750: SGL_RS13750 - hypothetical protein, at 2,552,177 to 2,552,962
_RS13750
SGL_RS13755: SGL_RS13755 - hypothetical protein, at 2,553,075 to 2,553,338
_RS13755
SGL_RS13760: SGL_RS13760 - PQ-loop repeat-containing protein, at 2,553,495 to 2,553,788
_RS13760
SGL_RS13765: SGL_RS13765 - glycolate oxidase subunit GlcD, at 2,553,961 to 2,555,439
_RS13765
Position (kb)
2552
2553 Strain fitness (log2 ratio)
-1
0
1 at 2551.972 kb on + strand, within SGL_RS13745 at 2552.081 kb on - strand, within SGL_RS13745 at 2552.259 kb on - strand, within SGL_RS13750 at 2552.272 kb on + strand, within SGL_RS13750 at 2553.021 kb on - strand at 2553.032 kb on + strand at 2553.711 kb on - strand, within SGL_RS13760
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation remove 2,551,972 + SGL_RS13745 0.60 -0.3 2,552,081 - SGL_RS13745 0.82 +0.2 2,552,259 - SGL_RS13750 0.10 +0.6 2,552,272 + SGL_RS13750 0.12 -0.0 2,553,021 - -0.1 2,553,032 + +0.1 2,553,711 - SGL_RS13760 0.73 -0.3
Or see this region's nucleotide sequence