Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12310

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12305 and SGL_RS18965 are separated by 21 nucleotidesSGL_RS18965 and SGL_RS12310 are separated by 57 nucleotidesSGL_RS12310 and SGL_RS12315 are separated by 220 nucleotidesSGL_RS12315 and SGL_RS12320 are separated by 198 nucleotides SGL_RS12305: SGL_RS12305 - type II secretion system protein, at 2,222,316 to 2,222,876 _RS12305 SGL_RS18965: SGL_RS18965 - hypothetical protein, at 2,222,898 to 2,223,815 _RS18965 SGL_RS12310: SGL_RS12310 - alpha/beta hydrolase, at 2,223,873 to 2,224,568 _RS12310 SGL_RS12315: SGL_RS12315 - hypothetical protein, at 2,224,789 to 2,225,079 _RS12315 SGL_RS12320: SGL_RS12320 - hypothetical protein, at 2,225,278 to 2,225,709 _RS12320 Position (kb) 2223 2224 2225Strain fitness (log2 ratio) -1 0 1 2 3at 2223.279 kb on - strand, within SGL_RS18965at 2223.311 kb on + strand, within SGL_RS18965at 2223.311 kb on + strand, within SGL_RS18965at 2223.321 kb on - strand, within SGL_RS18965at 2223.396 kb on + strand, within SGL_RS18965at 2223.443 kb on - strand, within SGL_RS18965at 2223.551 kb on - strand, within SGL_RS18965at 2223.782 kb on - strandat 2223.925 kb on - strandat 2223.930 kb on - strandat 2224.095 kb on + strand, within SGL_RS12310at 2224.148 kb on + strand, within SGL_RS12310at 2224.211 kb on - strand, within SGL_RS12310at 2224.324 kb on - strand, within SGL_RS12310at 2224.334 kb on + strand, within SGL_RS12310at 2224.337 kb on - strand, within SGL_RS12310at 2224.354 kb on - strand, within SGL_RS12310at 2224.355 kb on - strand, within SGL_RS12310at 2224.476 kb on + strand, within SGL_RS12310at 2224.677 kb on - strandat 2224.785 kb on - strandat 2224.883 kb on - strand, within SGL_RS12315at 2224.895 kb on - strand, within SGL_RS12315at 2224.895 kb on - strand, within SGL_RS12315at 2225.164 kb on - strandat 2225.186 kb on + strandat 2225.349 kb on - strand, within SGL_RS12320at 2225.420 kb on + strand, within SGL_RS12320at 2225.428 kb on - strand, within SGL_RS12320at 2225.514 kb on + strand, within SGL_RS12320

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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2,223,279 - SGL_RS18965 0.42 -0.2
2,223,311 + SGL_RS18965 0.45 +0.1
2,223,311 + SGL_RS18965 0.45 +0.0
2,223,321 - SGL_RS18965 0.46 +0.1
2,223,396 + SGL_RS18965 0.54 +0.3
2,223,443 - SGL_RS18965 0.59 -0.0
2,223,551 - SGL_RS18965 0.71 -0.3
2,223,782 - -0.7
2,223,925 - +0.5
2,223,930 - +0.2
2,224,095 + SGL_RS12310 0.32 +0.5
2,224,148 + SGL_RS12310 0.40 +0.6
2,224,211 - SGL_RS12310 0.49 -0.6
2,224,324 - SGL_RS12310 0.65 -0.1
2,224,334 + SGL_RS12310 0.66 +0.1
2,224,337 - SGL_RS12310 0.67 +1.1
2,224,354 - SGL_RS12310 0.69 +0.2
2,224,355 - SGL_RS12310 0.69 +2.9
2,224,476 + SGL_RS12310 0.87 -0.4
2,224,677 - +0.1
2,224,785 - +0.2
2,224,883 - SGL_RS12315 0.32 -0.5
2,224,895 - SGL_RS12315 0.36 +0.5
2,224,895 - SGL_RS12315 0.36 +0.4
2,225,164 - -0.4
2,225,186 + +0.5
2,225,349 - SGL_RS12320 0.16 +0.1
2,225,420 + SGL_RS12320 0.33 -0.8
2,225,428 - SGL_RS12320 0.35 +0.3
2,225,514 + SGL_RS12320 0.55 -0.2

Or see this region's nucleotide sequence