Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10880

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10875 and SGL_RS10880 are separated by 19 nucleotidesSGL_RS10880 and SGL_RS10885 are separated by 182 nucleotidesSGL_RS10885 and SGL_RS10890 are separated by 38 nucleotides SGL_RS10875: SGL_RS10875 - NAD(P)H-hydrate dehydratase, at 1,906,170 to 1,907,744 _RS10875 SGL_RS10880: SGL_RS10880 - hydrogenase nickel incorporation protein HypB, at 1,907,764 to 1,908,621 _RS10880 SGL_RS10885: SGL_RS10885 - hypothetical protein, at 1,908,804 to 1,909,151 _RS10885 SGL_RS10890: SGL_RS10890 - LD-carboxypeptidase, at 1,909,190 to 1,910,095 _RS10890 Position (kb) 1907 1908 1909Strain fitness (log2 ratio) -1 0 1at 1906.766 kb on - strand, within SGL_RS10875at 1906.800 kb on + strand, within SGL_RS10875at 1906.858 kb on - strand, within SGL_RS10875at 1906.870 kb on + strand, within SGL_RS10875at 1906.870 kb on + strand, within SGL_RS10875at 1906.933 kb on - strand, within SGL_RS10875at 1906.987 kb on - strand, within SGL_RS10875at 1907.061 kb on - strand, within SGL_RS10875at 1907.061 kb on - strand, within SGL_RS10875at 1907.071 kb on + strand, within SGL_RS10875at 1907.071 kb on + strand, within SGL_RS10875at 1907.148 kb on + strand, within SGL_RS10875at 1907.186 kb on + strand, within SGL_RS10875at 1907.264 kb on + strand, within SGL_RS10875at 1907.348 kb on - strand, within SGL_RS10875at 1907.406 kb on - strand, within SGL_RS10875at 1907.459 kb on + strand, within SGL_RS10875at 1907.467 kb on - strand, within SGL_RS10875at 1907.483 kb on - strand, within SGL_RS10875at 1907.525 kb on + strand, within SGL_RS10875at 1907.533 kb on - strand, within SGL_RS10875at 1907.533 kb on - strand, within SGL_RS10875at 1907.552 kb on - strand, within SGL_RS10875at 1907.630 kb on - strandat 1907.656 kb on + strandat 1907.664 kb on - strandat 1907.748 kb on - strandat 1907.775 kb on - strandat 1907.797 kb on + strandat 1907.797 kb on + strandat 1907.797 kb on - strandat 1907.911 kb on + strand, within SGL_RS10880at 1907.955 kb on - strand, within SGL_RS10880at 1908.005 kb on + strand, within SGL_RS10880at 1908.193 kb on - strand, within SGL_RS10880at 1908.324 kb on - strand, within SGL_RS10880at 1908.330 kb on + strand, within SGL_RS10880at 1908.363 kb on - strand, within SGL_RS10880at 1908.469 kb on + strand, within SGL_RS10880at 1908.531 kb on + strand, within SGL_RS10880at 1908.539 kb on - strandat 1908.674 kb on - strandat 1909.266 kb on + strandat 1909.419 kb on + strand, within SGL_RS10890at 1909.574 kb on + strand, within SGL_RS10890at 1909.593 kb on + strand, within SGL_RS10890at 1909.593 kb on + strand, within SGL_RS10890at 1909.601 kb on - strand, within SGL_RS10890at 1909.601 kb on - strand, within SGL_RS10890at 1909.605 kb on - strand, within SGL_RS10890at 1909.615 kb on - strand, within SGL_RS10890

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,906,766 - SGL_RS10875 0.38 -0.3
1,906,800 + SGL_RS10875 0.40 +1.3
1,906,858 - SGL_RS10875 0.44 +0.1
1,906,870 + SGL_RS10875 0.44 +0.3
1,906,870 + SGL_RS10875 0.44 -0.0
1,906,933 - SGL_RS10875 0.48 -0.3
1,906,987 - SGL_RS10875 0.52 -0.3
1,907,061 - SGL_RS10875 0.57 +0.5
1,907,061 - SGL_RS10875 0.57 -0.3
1,907,071 + SGL_RS10875 0.57 +0.7
1,907,071 + SGL_RS10875 0.57 +0.3
1,907,148 + SGL_RS10875 0.62 +0.3
1,907,186 + SGL_RS10875 0.65 -0.1
1,907,264 + SGL_RS10875 0.69 +0.2
1,907,348 - SGL_RS10875 0.75 +0.3
1,907,406 - SGL_RS10875 0.78 +0.5
1,907,459 + SGL_RS10875 0.82 +0.2
1,907,467 - SGL_RS10875 0.82 +0.2
1,907,483 - SGL_RS10875 0.83 +0.0
1,907,525 + SGL_RS10875 0.86 +0.2
1,907,533 - SGL_RS10875 0.87 +0.0
1,907,533 - SGL_RS10875 0.87 -0.6
1,907,552 - SGL_RS10875 0.88 +0.2
1,907,630 - -0.0
1,907,656 + +0.1
1,907,664 - -0.0
1,907,748 - +0.0
1,907,775 - -0.4
1,907,797 + +0.2
1,907,797 + +0.0
1,907,797 - +0.1
1,907,911 + SGL_RS10880 0.17 -0.1
1,907,955 - SGL_RS10880 0.22 -0.1
1,908,005 + SGL_RS10880 0.28 +0.7
1,908,193 - SGL_RS10880 0.50 +0.6
1,908,324 - SGL_RS10880 0.65 +0.1
1,908,330 + SGL_RS10880 0.66 -0.0
1,908,363 - SGL_RS10880 0.70 -0.5
1,908,469 + SGL_RS10880 0.82 +0.4
1,908,531 + SGL_RS10880 0.89 +1.1
1,908,539 - +0.1
1,908,674 - -0.0
1,909,266 + +0.1
1,909,419 + SGL_RS10890 0.25 -0.0
1,909,574 + SGL_RS10890 0.42 -0.7
1,909,593 + SGL_RS10890 0.44 -0.8
1,909,593 + SGL_RS10890 0.44 +0.3
1,909,601 - SGL_RS10890 0.45 -0.4
1,909,601 - SGL_RS10890 0.45 +0.1
1,909,605 - SGL_RS10890 0.46 +0.4
1,909,615 - SGL_RS10890 0.47 +0.2

Or see this region's nucleotide sequence