Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10875 and SGL_RS10880 are separated by 19 nucleotides SGL_RS10880 and SGL_RS10885 are separated by 182 nucleotides SGL_RS10885 and SGL_RS10890 are separated by 38 nucleotides
SGL_RS10875: SGL_RS10875 - NAD(P)H-hydrate dehydratase, at 1,906,170 to 1,907,744
_RS10875
SGL_RS10880: SGL_RS10880 - hydrogenase nickel incorporation protein HypB, at 1,907,764 to 1,908,621
_RS10880
SGL_RS10885: SGL_RS10885 - hypothetical protein, at 1,908,804 to 1,909,151
_RS10885
SGL_RS10890: SGL_RS10890 - LD-carboxypeptidase, at 1,909,190 to 1,910,095
_RS10890
Position (kb)
1907
1908
1909 Strain fitness (log2 ratio)
-1
0
1 at 1906.766 kb on - strand, within SGL_RS10875 at 1906.800 kb on + strand, within SGL_RS10875 at 1906.858 kb on - strand, within SGL_RS10875 at 1906.870 kb on + strand, within SGL_RS10875 at 1906.870 kb on + strand, within SGL_RS10875 at 1906.933 kb on - strand, within SGL_RS10875 at 1906.987 kb on - strand, within SGL_RS10875 at 1907.061 kb on - strand, within SGL_RS10875 at 1907.061 kb on - strand, within SGL_RS10875 at 1907.071 kb on + strand, within SGL_RS10875 at 1907.071 kb on + strand, within SGL_RS10875 at 1907.148 kb on + strand, within SGL_RS10875 at 1907.186 kb on + strand, within SGL_RS10875 at 1907.264 kb on + strand, within SGL_RS10875 at 1907.348 kb on - strand, within SGL_RS10875 at 1907.406 kb on - strand, within SGL_RS10875 at 1907.459 kb on + strand, within SGL_RS10875 at 1907.467 kb on - strand, within SGL_RS10875 at 1907.483 kb on - strand, within SGL_RS10875 at 1907.525 kb on + strand, within SGL_RS10875 at 1907.533 kb on - strand, within SGL_RS10875 at 1907.533 kb on - strand, within SGL_RS10875 at 1907.552 kb on - strand, within SGL_RS10875 at 1907.630 kb on - strand at 1907.656 kb on + strand at 1907.664 kb on - strand at 1907.748 kb on - strand at 1907.775 kb on - strand at 1907.797 kb on + strand at 1907.797 kb on + strand at 1907.797 kb on - strand at 1907.911 kb on + strand, within SGL_RS10880 at 1907.955 kb on - strand, within SGL_RS10880 at 1908.005 kb on + strand, within SGL_RS10880 at 1908.193 kb on - strand, within SGL_RS10880 at 1908.324 kb on - strand, within SGL_RS10880 at 1908.330 kb on + strand, within SGL_RS10880 at 1908.363 kb on - strand, within SGL_RS10880 at 1908.469 kb on + strand, within SGL_RS10880 at 1908.531 kb on + strand, within SGL_RS10880 at 1908.539 kb on - strand at 1908.674 kb on - strand at 1909.266 kb on + strand at 1909.419 kb on + strand, within SGL_RS10890 at 1909.574 kb on + strand, within SGL_RS10890 at 1909.593 kb on + strand, within SGL_RS10890 at 1909.593 kb on + strand, within SGL_RS10890 at 1909.601 kb on - strand, within SGL_RS10890 at 1909.601 kb on - strand, within SGL_RS10890 at 1909.605 kb on - strand, within SGL_RS10890 at 1909.615 kb on - strand, within SGL_RS10890
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation remove 1,906,766 - SGL_RS10875 0.38 -0.3 1,906,800 + SGL_RS10875 0.40 +1.3 1,906,858 - SGL_RS10875 0.44 +0.1 1,906,870 + SGL_RS10875 0.44 +0.3 1,906,870 + SGL_RS10875 0.44 -0.0 1,906,933 - SGL_RS10875 0.48 -0.3 1,906,987 - SGL_RS10875 0.52 -0.3 1,907,061 - SGL_RS10875 0.57 +0.5 1,907,061 - SGL_RS10875 0.57 -0.3 1,907,071 + SGL_RS10875 0.57 +0.7 1,907,071 + SGL_RS10875 0.57 +0.3 1,907,148 + SGL_RS10875 0.62 +0.3 1,907,186 + SGL_RS10875 0.65 -0.1 1,907,264 + SGL_RS10875 0.69 +0.2 1,907,348 - SGL_RS10875 0.75 +0.3 1,907,406 - SGL_RS10875 0.78 +0.5 1,907,459 + SGL_RS10875 0.82 +0.2 1,907,467 - SGL_RS10875 0.82 +0.2 1,907,483 - SGL_RS10875 0.83 +0.0 1,907,525 + SGL_RS10875 0.86 +0.2 1,907,533 - SGL_RS10875 0.87 +0.0 1,907,533 - SGL_RS10875 0.87 -0.6 1,907,552 - SGL_RS10875 0.88 +0.2 1,907,630 - -0.0 1,907,656 + +0.1 1,907,664 - -0.0 1,907,748 - +0.0 1,907,775 - -0.4 1,907,797 + +0.2 1,907,797 + +0.0 1,907,797 - +0.1 1,907,911 + SGL_RS10880 0.17 -0.1 1,907,955 - SGL_RS10880 0.22 -0.1 1,908,005 + SGL_RS10880 0.28 +0.7 1,908,193 - SGL_RS10880 0.50 +0.6 1,908,324 - SGL_RS10880 0.65 +0.1 1,908,330 + SGL_RS10880 0.66 -0.0 1,908,363 - SGL_RS10880 0.70 -0.5 1,908,469 + SGL_RS10880 0.82 +0.4 1,908,531 + SGL_RS10880 0.89 +1.1 1,908,539 - +0.1 1,908,674 - -0.0 1,909,266 + +0.1 1,909,419 + SGL_RS10890 0.25 -0.0 1,909,574 + SGL_RS10890 0.42 -0.7 1,909,593 + SGL_RS10890 0.44 -0.8 1,909,593 + SGL_RS10890 0.44 +0.3 1,909,601 - SGL_RS10890 0.45 -0.4 1,909,601 - SGL_RS10890 0.45 +0.1 1,909,605 - SGL_RS10890 0.46 +0.4 1,909,615 - SGL_RS10890 0.47 +0.2
Or see this region's nucleotide sequence