Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10755

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10750 and SGL_RS10755 are separated by 300 nucleotides SGL_RS10750: SGL_RS10750 - diguanylate cyclase, at 1,878,099 to 1,879,682 _RS10750 SGL_RS10755: SGL_RS10755 - Crp/Fnr family transcriptional regulator, at 1,879,983 to 1,880,699 _RS10755 Position (kb) 1879 1880 1881Strain fitness (log2 ratio) -1 0 1at 1879.282 kb on - strand, within SGL_RS10750at 1879.286 kb on + strand, within SGL_RS10750at 1879.341 kb on - strand, within SGL_RS10750at 1879.481 kb on - strand, within SGL_RS10750at 1879.584 kb on + strandat 1879.606 kb on + strandat 1879.679 kb on + strandat 1879.861 kb on + strandat 1880.100 kb on + strand, within SGL_RS10755at 1880.249 kb on - strand, within SGL_RS10755at 1880.394 kb on - strand, within SGL_RS10755at 1880.420 kb on + strand, within SGL_RS10755at 1880.423 kb on - strand, within SGL_RS10755at 1880.580 kb on + strand, within SGL_RS10755at 1880.593 kb on - strand, within SGL_RS10755at 1880.659 kb on + strandat 1880.948 kb on - strandat 1881.010 kb on - strandat 1881.245 kb on + strandat 1881.427 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,879,282 - SGL_RS10750 0.75 -0.1
1,879,286 + SGL_RS10750 0.75 +0.3
1,879,341 - SGL_RS10750 0.78 +0.0
1,879,481 - SGL_RS10750 0.87 +0.1
1,879,584 + -1.1
1,879,606 + -0.0
1,879,679 + +0.0
1,879,861 + -0.2
1,880,100 + SGL_RS10755 0.16 -0.2
1,880,249 - SGL_RS10755 0.37 +0.7
1,880,394 - SGL_RS10755 0.57 +0.3
1,880,420 + SGL_RS10755 0.61 +1.0
1,880,423 - SGL_RS10755 0.61 +0.5
1,880,580 + SGL_RS10755 0.83 -0.1
1,880,593 - SGL_RS10755 0.85 -0.1
1,880,659 + +0.0
1,880,948 - +0.7
1,881,010 - +0.1
1,881,245 + -0.1
1,881,427 + +0.4

Or see this region's nucleotide sequence