Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10710

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10700 and SGL_RS10705 are separated by 8 nucleotidesSGL_RS10705 and SGL_RS10710 are separated by 19 nucleotidesSGL_RS10710 and SGL_RS10715 are separated by 66 nucleotides SGL_RS10700: SGL_RS10700 - type IV pilus secretin PilQ, at 1,868,660 to 1,871,002 _RS10700 SGL_RS10705: SGL_RS10705 - FkbM family methyltransferase, at 1,871,011 to 1,871,835 _RS10705 SGL_RS10710: SGL_RS10710 - FkbM family methyltransferase, at 1,871,855 to 1,872,589 _RS10710 SGL_RS10715: SGL_RS10715 - tRNA lysidine(34) synthetase TilS, at 1,872,656 to 1,873,648 _RS10715 Position (kb) 1871 1872 1873Strain fitness (log2 ratio) -1 0 1at 1871.027 kb on + strandat 1871.299 kb on + strand, within SGL_RS10705at 1871.358 kb on - strand, within SGL_RS10705at 1871.939 kb on - strand, within SGL_RS10710at 1871.941 kb on + strand, within SGL_RS10710at 1871.986 kb on + strand, within SGL_RS10710at 1871.996 kb on - strand, within SGL_RS10710at 1872.577 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,871,027 + +0.4
1,871,299 + SGL_RS10705 0.35 +0.0
1,871,358 - SGL_RS10705 0.42 +0.1
1,871,939 - SGL_RS10710 0.11 +0.2
1,871,941 + SGL_RS10710 0.12 +0.4
1,871,986 + SGL_RS10710 0.18 -0.1
1,871,996 - SGL_RS10710 0.19 +0.6
1,872,577 - -0.0

Or see this region's nucleotide sequence