Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10375

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10370 and SGL_RS10375 are separated by 5 nucleotidesSGL_RS10375 and SGL_RS10380 are separated by 61 nucleotides SGL_RS10370: SGL_RS10370 - anthranilate synthase component I, at 1,800,387 to 1,801,844 _RS10370 SGL_RS10375: SGL_RS10375 - EI24 domain-containing protein, at 1,801,850 to 1,802,680 _RS10375 SGL_RS10380: SGL_RS10380 - oxygen-independent coproporphyrinogen III oxidase, at 1,802,742 to 1,804,142 _RS10380 Position (kb) 1801 1802 1803Strain fitness (log2 ratio) -1 0 1at 1801.049 kb on + strand, within SGL_RS10370at 1801.119 kb on - strand, within SGL_RS10370at 1801.309 kb on + strand, within SGL_RS10370at 1801.428 kb on + strand, within SGL_RS10370at 1801.486 kb on - strand, within SGL_RS10370at 1801.677 kb on - strand, within SGL_RS10370at 1801.731 kb on - strandat 1802.075 kb on + strand, within SGL_RS10375at 1802.496 kb on + strand, within SGL_RS10375at 1802.843 kb on + strandat 1802.851 kb on - strandat 1803.185 kb on - strand, within SGL_RS10380at 1803.229 kb on - strand, within SGL_RS10380at 1803.307 kb on - strand, within SGL_RS10380at 1803.435 kb on - strand, within SGL_RS10380

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,801,049 + SGL_RS10370 0.45 -0.9
1,801,119 - SGL_RS10370 0.50 -0.2
1,801,309 + SGL_RS10370 0.63 -0.1
1,801,428 + SGL_RS10370 0.71 +0.1
1,801,486 - SGL_RS10370 0.75 -0.6
1,801,677 - SGL_RS10370 0.88 +0.1
1,801,731 - -0.7
1,802,075 + SGL_RS10375 0.27 +0.6
1,802,496 + SGL_RS10375 0.78 -0.0
1,802,843 + -0.2
1,802,851 - -0.0
1,803,185 - SGL_RS10380 0.32 -0.4
1,803,229 - SGL_RS10380 0.35 -0.4
1,803,307 - SGL_RS10380 0.40 +0.3
1,803,435 - SGL_RS10380 0.49 -0.1

Or see this region's nucleotide sequence