Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09880

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09875 and SGL_RS09880 overlap by 11 nucleotidesSGL_RS09880 and SGL_RS09885 are separated by 461 nucleotidesSGL_RS09885 and SGL_RS09890 are separated by 56 nucleotides SGL_RS09875: SGL_RS09875 - glycosyltransferase, at 1,698,838 to 1,699,980 _RS09875 SGL_RS09880: SGL_RS09880 - hypothetical protein, at 1,699,970 to 1,700,431 _RS09880 SGL_RS09885: SGL_RS09885 - NAD(P)H-quinone oxidoreductase subunit L, at 1,700,893 to 1,701,135 _RS09885 SGL_RS09890: SGL_RS09890 - DUF3007 family protein, at 1,701,192 to 1,701,557 _RS09890 Position (kb) 1699 1700 1701Strain fitness (log2 ratio) -2 -1 0 1at 1698.976 kb on - strand, within SGL_RS09875at 1698.981 kb on - strand, within SGL_RS09875at 1699.021 kb on - strand, within SGL_RS09875at 1699.047 kb on + strand, within SGL_RS09875at 1699.055 kb on - strand, within SGL_RS09875at 1699.072 kb on - strand, within SGL_RS09875at 1699.079 kb on - strand, within SGL_RS09875at 1699.164 kb on + strand, within SGL_RS09875at 1699.357 kb on - strand, within SGL_RS09875at 1699.425 kb on - strand, within SGL_RS09875at 1699.538 kb on - strand, within SGL_RS09875at 1699.571 kb on - strand, within SGL_RS09875at 1699.727 kb on + strand, within SGL_RS09875at 1699.753 kb on - strand, within SGL_RS09875at 1700.056 kb on + strand, within SGL_RS09880at 1700.105 kb on + strand, within SGL_RS09880at 1700.206 kb on + strand, within SGL_RS09880at 1700.241 kb on + strand, within SGL_RS09880at 1700.267 kb on + strand, within SGL_RS09880at 1700.285 kb on - strand, within SGL_RS09880at 1700.389 kb on - strandat 1700.427 kb on + strandat 1700.603 kb on - strandat 1700.611 kb on + strandat 1701.160 kb on - strandat 1701.220 kb on - strandat 1701.331 kb on + strand, within SGL_RS09890at 1701.371 kb on - strand, within SGL_RS09890at 1701.376 kb on - strand, within SGL_RS09890

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,698,976 - SGL_RS09875 0.12 -0.1
1,698,981 - SGL_RS09875 0.13 -0.5
1,699,021 - SGL_RS09875 0.16 -0.1
1,699,047 + SGL_RS09875 0.18 +0.3
1,699,055 - SGL_RS09875 0.19 +0.0
1,699,072 - SGL_RS09875 0.20 +0.2
1,699,079 - SGL_RS09875 0.21 +0.1
1,699,164 + SGL_RS09875 0.29 -0.6
1,699,357 - SGL_RS09875 0.45 -0.2
1,699,425 - SGL_RS09875 0.51 -0.5
1,699,538 - SGL_RS09875 0.61 -0.7
1,699,571 - SGL_RS09875 0.64 -0.2
1,699,727 + SGL_RS09875 0.78 -0.7
1,699,753 - SGL_RS09875 0.80 -0.3
1,700,056 + SGL_RS09880 0.19 -0.2
1,700,105 + SGL_RS09880 0.29 -0.9
1,700,206 + SGL_RS09880 0.51 +1.6
1,700,241 + SGL_RS09880 0.59 +0.4
1,700,267 + SGL_RS09880 0.64 +0.3
1,700,285 - SGL_RS09880 0.68 +0.4
1,700,389 - -0.2
1,700,427 + -0.2
1,700,603 - +0.3
1,700,611 + +1.1
1,701,160 - -0.0
1,701,220 - -0.1
1,701,331 + SGL_RS09890 0.38 -1.6
1,701,371 - SGL_RS09890 0.49 -2.7
1,701,376 - SGL_RS09890 0.50 -2.3

Or see this region's nucleotide sequence