Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09855

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09850 and SGL_RS09855 are separated by 55 nucleotidesSGL_RS09855 and SGL_RS09860 are separated by 485 nucleotides SGL_RS09850: SGL_RS09850 - Gfo/Idh/MocA family oxidoreductase, at 1,693,546 to 1,694,661 _RS09850 SGL_RS09855: SGL_RS09855 - slipin family protein, at 1,694,717 to 1,695,400 _RS09855 SGL_RS09860: SGL_RS09860 - carotenoid biosynthesis protein, at 1,695,886 to 1,696,797 _RS09860 Position (kb) 1694 1695 1696Strain fitness (log2 ratio) -1 0 1at 1693.825 kb on + strand, within SGL_RS09850at 1693.971 kb on - strand, within SGL_RS09850at 1693.971 kb on - strand, within SGL_RS09850at 1694.015 kb on + strand, within SGL_RS09850at 1694.015 kb on + strand, within SGL_RS09850at 1694.023 kb on - strand, within SGL_RS09850at 1694.023 kb on - strand, within SGL_RS09850at 1694.062 kb on - strand, within SGL_RS09850at 1694.067 kb on - strand, within SGL_RS09850at 1694.098 kb on + strand, within SGL_RS09850at 1694.105 kb on - strand, within SGL_RS09850at 1694.158 kb on - strand, within SGL_RS09850at 1694.209 kb on - strand, within SGL_RS09850at 1694.267 kb on - strand, within SGL_RS09850at 1694.312 kb on - strand, within SGL_RS09850at 1694.331 kb on + strand, within SGL_RS09850at 1694.524 kb on + strand, within SGL_RS09850at 1694.524 kb on + strand, within SGL_RS09850at 1694.532 kb on - strand, within SGL_RS09850at 1694.759 kb on + strandat 1694.883 kb on - strand, within SGL_RS09855at 1695.078 kb on - strand, within SGL_RS09855at 1695.657 kb on - strandat 1695.747 kb on + strandat 1695.916 kb on - strandat 1695.993 kb on - strand, within SGL_RS09860at 1696.044 kb on + strand, within SGL_RS09860at 1696.178 kb on + strand, within SGL_RS09860at 1696.178 kb on + strand, within SGL_RS09860

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,693,825 + SGL_RS09850 0.25 +0.2
1,693,971 - SGL_RS09850 0.38 +0.6
1,693,971 - SGL_RS09850 0.38 -0.2
1,694,015 + SGL_RS09850 0.42 -0.1
1,694,015 + SGL_RS09850 0.42 +0.3
1,694,023 - SGL_RS09850 0.43 -0.1
1,694,023 - SGL_RS09850 0.43 -0.0
1,694,062 - SGL_RS09850 0.46 +0.4
1,694,067 - SGL_RS09850 0.47 -0.6
1,694,098 + SGL_RS09850 0.49 -0.4
1,694,105 - SGL_RS09850 0.50 +0.9
1,694,158 - SGL_RS09850 0.55 +0.4
1,694,209 - SGL_RS09850 0.59 +0.3
1,694,267 - SGL_RS09850 0.65 -0.3
1,694,312 - SGL_RS09850 0.69 +0.6
1,694,331 + SGL_RS09850 0.70 -0.4
1,694,524 + SGL_RS09850 0.88 -0.1
1,694,524 + SGL_RS09850 0.88 -0.0
1,694,532 - SGL_RS09850 0.88 -1.7
1,694,759 + +0.5
1,694,883 - SGL_RS09855 0.24 +0.5
1,695,078 - SGL_RS09855 0.53 +0.2
1,695,657 - -1.2
1,695,747 + +0.3
1,695,916 - -0.2
1,695,993 - SGL_RS09860 0.12 +0.1
1,696,044 + SGL_RS09860 0.17 -0.1
1,696,178 + SGL_RS09860 0.32 +0.1
1,696,178 + SGL_RS09860 0.32 -1.0

Or see this region's nucleotide sequence