Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09685

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09680 and SGL_RS09685 are separated by 98 nucleotidesSGL_RS09685 and SGL_RS09690 are separated by 20 nucleotides SGL_RS09680: SGL_RS09680 - transglutaminase family protein, at 1,660,739 to 1,661,623 _RS09680 SGL_RS09685: SGL_RS09685 - Uma2 family endonuclease, at 1,661,722 to 1,662,285 _RS09685 SGL_RS09690: SGL_RS09690 - glycosyltransferase family 1 protein, at 1,662,306 to 1,663,502 _RS09690 Position (kb) 1661 1662 1663Strain fitness (log2 ratio) -1 0 1at 1660.907 kb on + strand, within SGL_RS09680at 1660.918 kb on + strand, within SGL_RS09680at 1660.918 kb on + strand, within SGL_RS09680at 1660.920 kb on - strand, within SGL_RS09680at 1660.926 kb on - strand, within SGL_RS09680at 1660.928 kb on + strand, within SGL_RS09680at 1660.938 kb on + strand, within SGL_RS09680at 1661.028 kb on + strand, within SGL_RS09680at 1661.036 kb on - strand, within SGL_RS09680at 1661.036 kb on - strand, within SGL_RS09680at 1661.073 kb on - strand, within SGL_RS09680at 1661.073 kb on - strand, within SGL_RS09680at 1661.086 kb on + strand, within SGL_RS09680at 1661.086 kb on + strand, within SGL_RS09680at 1661.094 kb on - strand, within SGL_RS09680at 1661.094 kb on - strand, within SGL_RS09680at 1661.104 kb on - strand, within SGL_RS09680at 1661.104 kb on - strand, within SGL_RS09680at 1661.115 kb on + strand, within SGL_RS09680at 1661.115 kb on + strand, within SGL_RS09680at 1661.123 kb on - strand, within SGL_RS09680at 1661.222 kb on + strand, within SGL_RS09680at 1661.311 kb on + strand, within SGL_RS09680at 1661.534 kb on - strand, within SGL_RS09680at 1661.609 kb on + strandat 1661.797 kb on - strand, within SGL_RS09685at 1661.895 kb on + strand, within SGL_RS09685at 1661.895 kb on + strand, within SGL_RS09685at 1662.031 kb on + strand, within SGL_RS09685at 1662.077 kb on - strand, within SGL_RS09685

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,660,907 + SGL_RS09680 0.19 -0.2
1,660,918 + SGL_RS09680 0.20 +0.1
1,660,918 + SGL_RS09680 0.20 +0.6
1,660,920 - SGL_RS09680 0.20 -0.6
1,660,926 - SGL_RS09680 0.21 -0.3
1,660,928 + SGL_RS09680 0.21 -0.3
1,660,938 + SGL_RS09680 0.22 +0.4
1,661,028 + SGL_RS09680 0.33 +0.1
1,661,036 - SGL_RS09680 0.34 -0.3
1,661,036 - SGL_RS09680 0.34 +0.1
1,661,073 - SGL_RS09680 0.38 +0.3
1,661,073 - SGL_RS09680 0.38 +0.3
1,661,086 + SGL_RS09680 0.39 +0.2
1,661,086 + SGL_RS09680 0.39 +0.4
1,661,094 - SGL_RS09680 0.40 -0.3
1,661,094 - SGL_RS09680 0.40 -1.7
1,661,104 - SGL_RS09680 0.41 +0.1
1,661,104 - SGL_RS09680 0.41 +0.9
1,661,115 + SGL_RS09680 0.42 +0.3
1,661,115 + SGL_RS09680 0.42 +0.3
1,661,123 - SGL_RS09680 0.43 -0.4
1,661,222 + SGL_RS09680 0.55 -0.7
1,661,311 + SGL_RS09680 0.65 +0.1
1,661,534 - SGL_RS09680 0.90 +0.2
1,661,609 + +0.3
1,661,797 - SGL_RS09685 0.13 +0.7
1,661,895 + SGL_RS09685 0.31 +0.6
1,661,895 + SGL_RS09685 0.31 -0.1
1,662,031 + SGL_RS09685 0.55 +0.2
1,662,077 - SGL_RS09685 0.63 +0.1

Or see this region's nucleotide sequence