Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09620

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09605 and SGL_RS09610 are separated by 73 nucleotidesSGL_RS09610 and SGL_RS09615 are separated by 41 nucleotidesSGL_RS09615 and SGL_RS09620 are separated by 17 nucleotidesSGL_RS09620 and SGL_RS09625 are separated by 1 nucleotidesSGL_RS09625 and SGL_RS09630 overlap by 8 nucleotides SGL_RS09605: SGL_RS09605 - efflux RND transporter permease subunit, at 1,644,905 to 1,648,090 _RS09605 SGL_RS09610: SGL_RS09610 - hypothetical protein, at 1,648,164 to 1,648,337 _RS09610 SGL_RS09615: SGL_RS09615 - PIN domain-containing protein, at 1,648,379 to 1,648,663 _RS09615 SGL_RS09620: SGL_RS09620 - hypothetical protein, at 1,648,681 to 1,649,439 _RS09620 SGL_RS09625: SGL_RS09625 - hypothetical protein, at 1,649,441 to 1,649,914 _RS09625 SGL_RS09630: SGL_RS09630 - hypothetical protein, at 1,649,907 to 1,650,443 _RS09630 Position (kb) 1648 1649 1650Strain fitness (log2 ratio) -1 0 1 2 3at 1647.754 kb on + strand, within SGL_RS09605at 1647.968 kb on + strandat 1647.976 kb on - strandat 1648.002 kb on + strandat 1648.027 kb on + strandat 1648.033 kb on + strandat 1648.034 kb on - strandat 1648.081 kb on - strandat 1648.169 kb on + strandat 1648.299 kb on - strand, within SGL_RS09610at 1648.658 kb on + strandat 1648.666 kb on - strandat 1648.666 kb on - strandat 1648.882 kb on + strand, within SGL_RS09620at 1650.234 kb on - strand, within SGL_RS09630

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,647,754 + SGL_RS09605 0.89 +0.6
1,647,968 + +0.4
1,647,976 - +0.1
1,648,002 + -0.7
1,648,027 + +3.2
1,648,033 + +1.2
1,648,034 - -0.1
1,648,081 - -0.5
1,648,169 + +0.4
1,648,299 - SGL_RS09610 0.78 -0.8
1,648,658 + -0.3
1,648,666 - +0.0
1,648,666 - +0.6
1,648,882 + SGL_RS09620 0.26 +0.2
1,650,234 - SGL_RS09630 0.61 -0.1

Or see this region's nucleotide sequence