Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08555

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08545 and SGL_RS19590 are separated by 376 nucleotidesSGL_RS19590 and SGL_RS08555 are separated by 300 nucleotidesSGL_RS08555 and SGL_RS08560 are separated by 93 nucleotides SGL_RS08545: SGL_RS08545 - Uma2 family endonuclease, at 1,418,995 to 1,419,573 _RS08545 SGL_RS19590: SGL_RS19590 - hypothetical protein, at 1,419,950 to 1,420,249 _RS19590 SGL_RS08555: SGL_RS08555 - DUF2442 domain-containing protein, at 1,420,550 to 1,420,846 _RS08555 SGL_RS08560: SGL_RS08560 - RNA-guided endonuclease TnpB family protein, at 1,420,940 to 1,422,142 _RS08560 Position (kb) 1420 1421Strain fitness (log2 ratio) -1 0 1at 1419.743 kb on - strandat 1419.784 kb on + strandat 1419.975 kb on + strandat 1420.069 kb on - strand, within SGL_RS19590at 1420.112 kb on - strand, within SGL_RS19590at 1420.316 kb on + strandat 1420.462 kb on + strandat 1420.465 kb on + strandat 1420.641 kb on - strand, within SGL_RS08555at 1421.086 kb on + strand, within SGL_RS08560at 1421.094 kb on - strand, within SGL_RS08560at 1421.364 kb on - strand, within SGL_RS08560at 1421.364 kb on - strand, within SGL_RS08560at 1421.554 kb on - strand, within SGL_RS08560at 1421.711 kb on + strand, within SGL_RS08560at 1421.725 kb on + strand, within SGL_RS08560at 1421.747 kb on + strand, within SGL_RS08560

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,419,743 - +0.3
1,419,784 + -0.5
1,419,975 + +0.5
1,420,069 - SGL_RS19590 0.40 -0.1
1,420,112 - SGL_RS19590 0.54 +0.0
1,420,316 + -0.1
1,420,462 + +0.2
1,420,465 + +0.1
1,420,641 - SGL_RS08555 0.31 +0.6
1,421,086 + SGL_RS08560 0.12 +0.4
1,421,094 - SGL_RS08560 0.13 -0.2
1,421,364 - SGL_RS08560 0.35 +0.1
1,421,364 - SGL_RS08560 0.35 +0.2
1,421,554 - SGL_RS08560 0.51 -0.2
1,421,711 + SGL_RS08560 0.64 +0.1
1,421,725 + SGL_RS08560 0.65 +0.1
1,421,747 + SGL_RS08560 0.67 -0.0

Or see this region's nucleotide sequence