Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08350

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08340 and SGL_RS08345 are separated by 195 nucleotidesSGL_RS08345 and SGL_RS08350 are separated by 34 nucleotidesSGL_RS08350 and SGL_RS08355 are separated by 79 nucleotidesSGL_RS08355 and SGL_RS08360 are separated by 72 nucleotides SGL_RS08340: SGL_RS08340 - adenylate/guanylate cyclase domain-containing protein, at 1,380,883 to 1,381,890 _RS08340 SGL_RS08345: SGL_RS08345 - hypothetical protein, at 1,382,086 to 1,382,568 _RS08345 SGL_RS08350: SGL_RS08350 - peroxiredoxin-like family protein, at 1,382,603 to 1,383,259 _RS08350 SGL_RS08355: SGL_RS08355 - hypothetical protein, at 1,383,339 to 1,383,755 _RS08355 SGL_RS08360: SGL_RS08360 - LysR family transcriptional regulator, at 1,383,828 to 1,384,736 _RS08360 Position (kb) 1382 1383 1384Strain fitness (log2 ratio) -1 0 1at 1381.779 kb on + strand, within SGL_RS08340at 1382.164 kb on - strand, within SGL_RS08345at 1382.254 kb on + strand, within SGL_RS08345at 1382.288 kb on - strand, within SGL_RS08345at 1382.400 kb on + strand, within SGL_RS08345at 1382.741 kb on - strand, within SGL_RS08350at 1383.282 kb on + strandat 1383.583 kb on + strand, within SGL_RS08355at 1384.110 kb on - strand, within SGL_RS08360

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,381,779 + SGL_RS08340 0.89 +0.4
1,382,164 - SGL_RS08345 0.16 -0.4
1,382,254 + SGL_RS08345 0.35 -0.7
1,382,288 - SGL_RS08345 0.42 +0.2
1,382,400 + SGL_RS08345 0.65 -0.5
1,382,741 - SGL_RS08350 0.21 +0.4
1,383,282 + -0.3
1,383,583 + SGL_RS08355 0.59 -0.1
1,384,110 - SGL_RS08360 0.31 +0.0

Or see this region's nucleotide sequence