Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08285

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS19845 and SGL_RS19850 are separated by 4 nucleotidesSGL_RS19850 and SGL_RS19455 are separated by 1 nucleotidesSGL_RS19455 and SGL_RS08285 are separated by 97 nucleotidesSGL_RS08285 and SGL_RS18780 are separated by 3 nucleotidesSGL_RS18780 and SGL_RS08290 are separated by 113 nucleotides SGL_RS19845: SGL_RS19845 - hypothetical protein, at 1,365,648 to 1,365,803 _RS19845 SGL_RS19850: SGL_RS19850 - hypothetical protein, at 1,365,808 to 1,366,215 _RS19850 SGL_RS19455: SGL_RS19455 - hypothetical protein, at 1,366,217 to 1,366,378 _RS19455 SGL_RS08285: SGL_RS08285 - hypothetical protein, at 1,366,476 to 1,366,769 _RS08285 SGL_RS18780: SGL_RS18780 - HNH endonuclease, at 1,366,773 to 1,367,015 _RS18780 SGL_RS08290: SGL_RS08290 - dynamin-like GTPase family protein, at 1,367,129 to 1,369,567 _RS08290 Position (kb) 1366 1367Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1365.493 kb on + strandat 1365.553 kb on + strandat 1365.553 kb on + strandat 1365.561 kb on - strandat 1365.561 kb on - strandat 1365.584 kb on + strandat 1365.638 kb on + strandat 1365.797 kb on + strandat 1365.804 kb on + strandat 1365.805 kb on - strandat 1365.812 kb on - strandat 1365.829 kb on + strandat 1365.837 kb on - strandat 1365.901 kb on - strand, within SGL_RS19850at 1365.970 kb on - strand, within SGL_RS19850at 1365.970 kb on - strand, within SGL_RS19850at 1365.996 kb on - strand, within SGL_RS19850at 1366.013 kb on + strand, within SGL_RS19850at 1366.013 kb on + strand, within SGL_RS19850at 1366.037 kb on - strand, within SGL_RS19850at 1366.058 kb on - strand, within SGL_RS19850at 1366.087 kb on - strand, within SGL_RS19850at 1366.152 kb on + strand, within SGL_RS19850at 1366.171 kb on + strand, within SGL_RS19850at 1366.542 kb on - strand, within SGL_RS08285at 1366.557 kb on + strand, within SGL_RS08285at 1366.569 kb on + strand, within SGL_RS08285at 1367.139 kb on - strandat 1367.139 kb on - strandat 1367.151 kb on + strandat 1367.201 kb on + strandat 1367.202 kb on + strandat 1367.234 kb on - strandat 1367.314 kb on - strandat 1367.393 kb on + strand, within SGL_RS08290at 1367.423 kb on + strand, within SGL_RS08290at 1367.534 kb on - strand, within SGL_RS08290

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,365,493 + -4.0
1,365,553 + -1.9
1,365,553 + -2.3
1,365,561 - -1.7
1,365,561 - -1.8
1,365,584 + -0.1
1,365,638 + +0.0
1,365,797 + -0.2
1,365,804 + +0.2
1,365,805 - +0.6
1,365,812 - -0.2
1,365,829 + +0.0
1,365,837 - +0.3
1,365,901 - SGL_RS19850 0.23 -0.9
1,365,970 - SGL_RS19850 0.40 -0.1
1,365,970 - SGL_RS19850 0.40 -0.9
1,365,996 - SGL_RS19850 0.46 -0.5
1,366,013 + SGL_RS19850 0.50 -0.9
1,366,013 + SGL_RS19850 0.50 +0.3
1,366,037 - SGL_RS19850 0.56 +0.1
1,366,058 - SGL_RS19850 0.61 -0.2
1,366,087 - SGL_RS19850 0.68 +0.5
1,366,152 + SGL_RS19850 0.84 -0.3
1,366,171 + SGL_RS19850 0.89 +0.1
1,366,542 - SGL_RS08285 0.22 +0.7
1,366,557 + SGL_RS08285 0.28 +0.1
1,366,569 + SGL_RS08285 0.32 +0.1
1,367,139 - +0.3
1,367,139 - -0.3
1,367,151 + +0.7
1,367,201 + -0.5
1,367,202 + -0.1
1,367,234 - -0.3
1,367,314 - +0.2
1,367,393 + SGL_RS08290 0.11 +1.1
1,367,423 + SGL_RS08290 0.12 +0.3
1,367,534 - SGL_RS08290 0.17 -0.1

Or see this region's nucleotide sequence