Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08055

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08045 and SGL_RS08055 are separated by 293 nucleotidesSGL_RS08055 and SGL_RS08060 are separated by 12 nucleotidesSGL_RS08060 and SGL_RS08065 are separated by 163 nucleotides SGL_RS08045: SGL_RS08045 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 1,319,546 to 1,320,541 _RS08045 SGL_RS08055: SGL_RS08055 - two-component system response regulator, at 1,320,835 to 1,321,839 _RS08055 SGL_RS08060: SGL_RS08060 - energy-coupling factor ABC transporter ATP-binding protein, at 1,321,852 to 1,322,523 _RS08060 SGL_RS08065: SGL_RS08065 - homogentisate phytyltransferase, at 1,322,687 to 1,323,613 _RS08065 Position (kb) 1320 1321 1322Strain fitness (log2 ratio) -2 -1 0 1at 1319.918 kb on + strand, within SGL_RS08045at 1319.990 kb on + strand, within SGL_RS08045at 1319.997 kb on + strand, within SGL_RS08045at 1320.009 kb on + strand, within SGL_RS08045at 1320.019 kb on - strand, within SGL_RS08045at 1320.066 kb on + strand, within SGL_RS08045at 1320.074 kb on - strand, within SGL_RS08045at 1320.145 kb on - strand, within SGL_RS08045at 1320.173 kb on - strand, within SGL_RS08045at 1320.180 kb on - strand, within SGL_RS08045at 1320.287 kb on - strand, within SGL_RS08045at 1320.441 kb on - strand, within SGL_RS08045at 1320.595 kb on - strandat 1320.762 kb on + strandat 1320.830 kb on - strandat 1320.830 kb on - strandat 1320.830 kb on - strandat 1320.830 kb on - strandat 1320.997 kb on + strand, within SGL_RS08055at 1321.068 kb on + strand, within SGL_RS08055at 1321.068 kb on + strand, within SGL_RS08055at 1321.085 kb on - strand, within SGL_RS08055at 1321.135 kb on - strand, within SGL_RS08055at 1321.135 kb on - strand, within SGL_RS08055at 1321.197 kb on - strand, within SGL_RS08055at 1321.240 kb on + strand, within SGL_RS08055at 1321.293 kb on - strand, within SGL_RS08055at 1321.302 kb on + strand, within SGL_RS08055at 1321.360 kb on - strand, within SGL_RS08055at 1321.365 kb on - strand, within SGL_RS08055at 1321.378 kb on + strand, within SGL_RS08055at 1321.536 kb on + strand, within SGL_RS08055at 1321.897 kb on - strandat 1322.536 kb on + strandat 1322.611 kb on - strandat 1322.641 kb on + strandat 1322.744 kb on + strandat 1322.770 kb on - strandat 1322.799 kb on - strand, within SGL_RS08065

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,319,918 + SGL_RS08045 0.37 +0.5
1,319,990 + SGL_RS08045 0.45 -0.0
1,319,997 + SGL_RS08045 0.45 +0.1
1,320,009 + SGL_RS08045 0.46 -0.0
1,320,019 - SGL_RS08045 0.47 -0.0
1,320,066 + SGL_RS08045 0.52 +0.6
1,320,074 - SGL_RS08045 0.53 -0.0
1,320,145 - SGL_RS08045 0.60 +0.2
1,320,173 - SGL_RS08045 0.63 -0.1
1,320,180 - SGL_RS08045 0.64 +0.2
1,320,287 - SGL_RS08045 0.74 -0.9
1,320,441 - SGL_RS08045 0.90 -0.3
1,320,595 - +0.1
1,320,762 + -0.1
1,320,830 - +0.6
1,320,830 - -0.1
1,320,830 - -0.9
1,320,830 - -0.2
1,320,997 + SGL_RS08055 0.16 +1.2
1,321,068 + SGL_RS08055 0.23 -0.0
1,321,068 + SGL_RS08055 0.23 +0.6
1,321,085 - SGL_RS08055 0.25 +0.4
1,321,135 - SGL_RS08055 0.30 +0.0
1,321,135 - SGL_RS08055 0.30 +1.0
1,321,197 - SGL_RS08055 0.36 -0.1
1,321,240 + SGL_RS08055 0.40 +0.1
1,321,293 - SGL_RS08055 0.46 +0.1
1,321,302 + SGL_RS08055 0.46 +0.1
1,321,360 - SGL_RS08055 0.52 -0.2
1,321,365 - SGL_RS08055 0.53 +0.3
1,321,378 + SGL_RS08055 0.54 +0.6
1,321,536 + SGL_RS08055 0.70 +0.0
1,321,897 - +0.7
1,322,536 + -1.9
1,322,611 - -0.2
1,322,641 + -0.2
1,322,744 + +0.2
1,322,770 - +0.5
1,322,799 - SGL_RS08065 0.12 +0.1

Or see this region's nucleotide sequence