Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08015

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08005 and SGL_RS08010 are separated by 31 nucleotidesSGL_RS08010 and SGL_RS08015 are separated by 39 nucleotidesSGL_RS08015 and SGL_RS08020 are separated by 9 nucleotides SGL_RS08005: SGL_RS08005 - hypothetical protein, at 1,311,828 to 1,312,277 _RS08005 SGL_RS08010: SGL_RS08010 - nucleoside deaminase, at 1,312,309 to 1,312,803 _RS08010 SGL_RS08015: SGL_RS08015 - DUF29 family protein, at 1,312,843 to 1,313,268 _RS08015 SGL_RS08020: SGL_RS08020 - DASH family cryptochrome, at 1,313,278 to 1,314,747 _RS08020 Position (kb) 1312 1313 1314Strain fitness (log2 ratio) -1 0 1at 1312.076 kb on - strand, within SGL_RS08005at 1312.105 kb on - strand, within SGL_RS08005at 1312.125 kb on + strand, within SGL_RS08005at 1312.671 kb on - strand, within SGL_RS08010at 1312.954 kb on + strand, within SGL_RS08015at 1313.322 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,312,076 - SGL_RS08005 0.55 +0.1
1,312,105 - SGL_RS08005 0.62 +0.3
1,312,125 + SGL_RS08005 0.66 +0.1
1,312,671 - SGL_RS08010 0.73 -1.5
1,312,954 + SGL_RS08015 0.26 +0.2
1,313,322 - +0.3

Or see this region's nucleotide sequence