Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06965

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06955 and SGL_RS06960 are separated by 494 nucleotidesSGL_RS06960 and SGL_RS06965 are separated by 37 nucleotidesSGL_RS06965 and SGL_RS06970 are separated by 66 nucleotides SGL_RS06955: SGL_RS06955 - carbohydrate kinase, at 1,089,400 to 1,090,323 _RS06955 SGL_RS06960: SGL_RS06960 - cytochrome b, at 1,090,818 to 1,091,279 _RS06960 SGL_RS06965: SGL_RS06965 - hypothetical protein, at 1,091,317 to 1,091,631 _RS06965 SGL_RS06970: SGL_RS06970 - pentapeptide repeat-containing protein, at 1,091,698 to 1,092,894 _RS06970 Position (kb) 1091 1092Strain fitness (log2 ratio) -1 0 1at 1090.570 kb on - strandat 1090.585 kb on - strandat 1090.779 kb on + strandat 1090.915 kb on + strand, within SGL_RS06960at 1090.990 kb on + strand, within SGL_RS06960at 1091.162 kb on - strand, within SGL_RS06960at 1091.510 kb on + strand, within SGL_RS06965at 1091.532 kb on + strand, within SGL_RS06965at 1091.547 kb on - strand, within SGL_RS06965at 1091.613 kb on + strandat 1091.776 kb on + strandat 1091.780 kb on + strandat 1091.871 kb on + strand, within SGL_RS06970at 1091.891 kb on + strand, within SGL_RS06970at 1091.899 kb on - strand, within SGL_RS06970at 1091.937 kb on + strand, within SGL_RS06970at 1091.937 kb on + strand, within SGL_RS06970at 1091.967 kb on + strand, within SGL_RS06970at 1091.970 kb on - strand, within SGL_RS06970at 1091.972 kb on + strand, within SGL_RS06970at 1091.980 kb on - strand, within SGL_RS06970at 1092.007 kb on + strand, within SGL_RS06970at 1092.050 kb on - strand, within SGL_RS06970at 1092.052 kb on + strand, within SGL_RS06970at 1092.060 kb on - strand, within SGL_RS06970at 1092.060 kb on - strand, within SGL_RS06970at 1092.116 kb on - strand, within SGL_RS06970at 1092.141 kb on + strand, within SGL_RS06970at 1092.178 kb on - strand, within SGL_RS06970at 1092.329 kb on + strand, within SGL_RS06970at 1092.447 kb on + strand, within SGL_RS06970at 1092.449 kb on + strand, within SGL_RS06970at 1092.487 kb on - strand, within SGL_RS06970at 1092.622 kb on + strand, within SGL_RS06970

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,090,570 - +0.2
1,090,585 - -0.1
1,090,779 + -1.2
1,090,915 + SGL_RS06960 0.21 -0.7
1,090,990 + SGL_RS06960 0.37 +0.7
1,091,162 - SGL_RS06960 0.74 +0.2
1,091,510 + SGL_RS06965 0.61 +0.3
1,091,532 + SGL_RS06965 0.68 +0.1
1,091,547 - SGL_RS06965 0.73 +0.3
1,091,613 + +0.5
1,091,776 + -0.2
1,091,780 + +0.3
1,091,871 + SGL_RS06970 0.14 +0.0
1,091,891 + SGL_RS06970 0.16 -0.4
1,091,899 - SGL_RS06970 0.17 -0.6
1,091,937 + SGL_RS06970 0.20 +0.3
1,091,937 + SGL_RS06970 0.20 -0.2
1,091,967 + SGL_RS06970 0.22 -0.1
1,091,970 - SGL_RS06970 0.23 +0.1
1,091,972 + SGL_RS06970 0.23 +0.3
1,091,980 - SGL_RS06970 0.24 -0.0
1,092,007 + SGL_RS06970 0.26 +0.2
1,092,050 - SGL_RS06970 0.29 -0.8
1,092,052 + SGL_RS06970 0.30 +0.1
1,092,060 - SGL_RS06970 0.30 -0.3
1,092,060 - SGL_RS06970 0.30 +0.2
1,092,116 - SGL_RS06970 0.35 -0.1
1,092,141 + SGL_RS06970 0.37 +0.3
1,092,178 - SGL_RS06970 0.40 -0.1
1,092,329 + SGL_RS06970 0.53 -0.1
1,092,447 + SGL_RS06970 0.63 -0.4
1,092,449 + SGL_RS06970 0.63 +0.1
1,092,487 - SGL_RS06970 0.66 -0.5
1,092,622 + SGL_RS06970 0.77 +0.3

Or see this region's nucleotide sequence