Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06300

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06295 and SGL_RS06300 are separated by 397 nucleotidesSGL_RS06300 and SGL_RS06305 are separated by 415 nucleotides SGL_RS06295: SGL_RS06295 - NAD(P)H-quinone oxidoreductase subunit F, at 938,393 to 940,240 _RS06295 SGL_RS06300: SGL_RS06300 - hypothetical protein, at 940,638 to 941,270 _RS06300 SGL_RS06305: SGL_RS06305 - photosystem I core protein PsaA, at 941,686 to 943,941 _RS06305 Position (kb) 940 941 942Strain fitness (log2 ratio) -1 0 1at 939.733 kb on + strand, within SGL_RS06295at 939.923 kb on - strand, within SGL_RS06295at 939.965 kb on + strand, within SGL_RS06295at 940.072 kb on + strandat 940.123 kb on + strandat 940.192 kb on - strandat 940.687 kb on - strandat 940.755 kb on - strand, within SGL_RS06300at 940.757 kb on + strand, within SGL_RS06300at 940.757 kb on + strand, within SGL_RS06300at 940.765 kb on - strand, within SGL_RS06300at 941.007 kb on + strand, within SGL_RS06300at 941.050 kb on - strand, within SGL_RS06300at 941.050 kb on - strand, within SGL_RS06300at 941.108 kb on + strand, within SGL_RS06300at 941.524 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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939,733 + SGL_RS06295 0.73 +1.0
939,923 - SGL_RS06295 0.83 -0.3
939,965 + SGL_RS06295 0.85 +0.2
940,072 + +0.4
940,123 + +0.2
940,192 - +0.3
940,687 - -0.1
940,755 - SGL_RS06300 0.18 -0.4
940,757 + SGL_RS06300 0.19 +1.0
940,757 + SGL_RS06300 0.19 +0.7
940,765 - SGL_RS06300 0.20 +0.5
941,007 + SGL_RS06300 0.58 +0.4
941,050 - SGL_RS06300 0.65 -0.2
941,050 - SGL_RS06300 0.65 +0.3
941,108 + SGL_RS06300 0.74 +0.1
941,524 - +0.4

Or see this region's nucleotide sequence