Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05060

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05055 and SGL_RS05060 are separated by 178 nucleotidesSGL_RS05060 and SGL_RS05065 are separated by 22 nucleotides SGL_RS05055: SGL_RS05055 - GAF domain-containing protein, at 681,707 to 682,675 _RS05055 SGL_RS05060: SGL_RS05060 - hypothetical protein, at 682,854 to 683,117 _RS05060 SGL_RS05065: SGL_RS05065 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 683,140 to 684,153 _RS05065 Position (kb) 682 683 684Strain fitness (log2 ratio) -1 0 1at 681.855 kb on - strand, within SGL_RS05055at 681.968 kb on - strand, within SGL_RS05055at 682.036 kb on - strand, within SGL_RS05055at 682.076 kb on + strand, within SGL_RS05055at 682.133 kb on + strand, within SGL_RS05055at 682.139 kb on + strand, within SGL_RS05055at 682.142 kb on - strand, within SGL_RS05055at 682.181 kb on + strand, within SGL_RS05055at 682.552 kb on + strand, within SGL_RS05055at 682.987 kb on + strand, within SGL_RS05060at 683.061 kb on - strand, within SGL_RS05060at 683.078 kb on - strand, within SGL_RS05060

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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681,855 - SGL_RS05055 0.15 +1.0
681,968 - SGL_RS05055 0.27 +0.3
682,036 - SGL_RS05055 0.34 +0.6
682,076 + SGL_RS05055 0.38 +0.2
682,133 + SGL_RS05055 0.44 +0.3
682,139 + SGL_RS05055 0.45 -1.6
682,142 - SGL_RS05055 0.45 +0.7
682,181 + SGL_RS05055 0.49 +0.0
682,552 + SGL_RS05055 0.87 +0.2
682,987 + SGL_RS05060 0.50 +0.2
683,061 - SGL_RS05060 0.78 +1.6
683,078 - SGL_RS05060 0.85 -0.7

Or see this region's nucleotide sequence