Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05035

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS05030 and SGL_RS05035 are separated by 271 nucleotidesSGL_RS05035 and SGL_RS05040 are separated by 179 nucleotidesSGL_RS05040 and SGL_RS05050 are separated by 218 nucleotides SGL_RS05030: SGL_RS05030 - dienelactone hydrolase family protein, at 678,283 to 679,023 _RS05030 SGL_RS05035: SGL_RS05035 - hypothetical protein, at 679,295 to 679,510 _RS05035 SGL_RS05040: SGL_RS05040 - type II toxin-antitoxin system VapC family toxin, at 679,690 to 680,178 _RS05040 SGL_RS05050: SGL_RS05050 - lipid-A-disaccharide synthase-related protein, at 680,397 to 681,572 _RS05050 Position (kb) 679 680Strain fitness (log2 ratio) -1 0 1at 678.540 kb on - strand, within SGL_RS05030at 678.612 kb on - strand, within SGL_RS05030at 678.680 kb on - strand, within SGL_RS05030at 678.696 kb on - strand, within SGL_RS05030at 678.768 kb on + strand, within SGL_RS05030at 678.793 kb on - strand, within SGL_RS05030at 678.793 kb on - strand, within SGL_RS05030at 678.953 kb on + strandat 678.961 kb on - strandat 679.027 kb on - strandat 679.191 kb on + strandat 679.328 kb on + strand, within SGL_RS05035at 679.573 kb on + strandat 679.647 kb on - strandat 679.807 kb on - strand, within SGL_RS05040at 679.866 kb on + strand, within SGL_RS05040at 679.874 kb on - strand, within SGL_RS05040at 680.107 kb on + strand, within SGL_RS05040at 680.130 kb on - strandat 680.358 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
remove
678,540 - SGL_RS05030 0.35 -0.0
678,612 - SGL_RS05030 0.44 +0.1
678,680 - SGL_RS05030 0.54 +0.2
678,696 - SGL_RS05030 0.56 +0.1
678,768 + SGL_RS05030 0.65 +0.2
678,793 - SGL_RS05030 0.69 +0.4
678,793 - SGL_RS05030 0.69 -0.1
678,953 + -0.5
678,961 - -0.5
679,027 - -0.1
679,191 + -0.1
679,328 + SGL_RS05035 0.15 +0.7
679,573 + -0.3
679,647 - -0.2
679,807 - SGL_RS05040 0.24 -0.1
679,866 + SGL_RS05040 0.36 -0.0
679,874 - SGL_RS05040 0.38 +0.1
680,107 + SGL_RS05040 0.85 +0.5
680,130 - +1.0
680,358 + -0.2

Or see this region's nucleotide sequence