Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04380

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04370 and SGL_RS04375 are separated by 39 nucleotidesSGL_RS04375 and SGL_RS04380 are separated by 206 nucleotidesSGL_RS04380 and SGL_RS04385 are separated by 125 nucleotides SGL_RS04370: SGL_RS04370 - class I SAM-dependent methyltransferase, at 540,863 to 542,065 _RS04370 SGL_RS04375: SGL_RS04375 - hypothetical protein, at 542,105 to 542,596 _RS04375 SGL_RS04380: SGL_RS04380 - TerD family protein, at 542,803 to 543,342 _RS04380 SGL_RS04385: SGL_RS04385 - glutamate decarboxylase, at 543,468 to 544,871 _RS04385 Position (kb) 542 543 544Strain fitness (log2 ratio) -2 -1 0 1at 541.820 kb on - strand, within SGL_RS04370at 542.891 kb on - strand, within SGL_RS04380at 543.487 kb on + strandat 543.595 kb on - strandat 543.608 kb on - strandat 543.652 kb on + strand, within SGL_RS04385at 543.652 kb on + strand, within SGL_RS04385at 543.692 kb on + strand, within SGL_RS04385at 543.692 kb on + strand, within SGL_RS04385at 543.700 kb on - strand, within SGL_RS04385at 543.711 kb on - strand, within SGL_RS04385at 544.065 kb on - strand, within SGL_RS04385at 544.160 kb on - strand, within SGL_RS04385at 544.228 kb on - strand, within SGL_RS04385at 544.304 kb on + strand, within SGL_RS04385

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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541,820 - SGL_RS04370 0.80 -1.9
542,891 - SGL_RS04380 0.16 +0.3
543,487 + +0.0
543,595 - -0.1
543,608 - +0.0
543,652 + SGL_RS04385 0.13 -0.3
543,652 + SGL_RS04385 0.13 -0.1
543,692 + SGL_RS04385 0.16 +0.5
543,692 + SGL_RS04385 0.16 +0.4
543,700 - SGL_RS04385 0.17 +0.0
543,711 - SGL_RS04385 0.17 +1.3
544,065 - SGL_RS04385 0.43 +0.1
544,160 - SGL_RS04385 0.49 -0.4
544,228 - SGL_RS04385 0.54 +0.1
544,304 + SGL_RS04385 0.60 -0.0

Or see this region's nucleotide sequence