Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03885

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18680 and SGL_RS19780 overlap by 91 nucleotidesSGL_RS19780 and SGL_RS03885 are separated by 159 nucleotidesSGL_RS03885 and SGL_RS03890 are separated by 10 nucleotides SGL_RS18680: SGL_RS18680 - IS630 family transposase, at 421,765 to 422,343 _RS18680 SGL_RS19780: SGL_RS19780 - IS630 transposase-related protein, at 422,253 to 422,612 _RS19780 SGL_RS03885: SGL_RS03885 - response regulator transcription factor, at 422,772 to 423,479 _RS03885 SGL_RS03890: SGL_RS03890 - MraY family glycosyltransferase, at 423,490 to 424,566 _RS03890 Position (kb) 422 423 424Strain fitness (log2 ratio) -1 0 1 2at 422.941 kb on + strand, within SGL_RS03885at 422.951 kb on + strand, within SGL_RS03885at 422.959 kb on - strand, within SGL_RS03885at 423.003 kb on + strand, within SGL_RS03885at 423.165 kb on + strand, within SGL_RS03885at 423.301 kb on - strand, within SGL_RS03885at 423.301 kb on - strand, within SGL_RS03885at 423.326 kb on - strand, within SGL_RS03885at 423.407 kb on + strand, within SGL_RS03885at 423.533 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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422,941 + SGL_RS03885 0.24 +0.2
422,951 + SGL_RS03885 0.25 -0.0
422,959 - SGL_RS03885 0.26 -0.0
423,003 + SGL_RS03885 0.33 +0.8
423,165 + SGL_RS03885 0.56 +0.5
423,301 - SGL_RS03885 0.75 +0.1
423,301 - SGL_RS03885 0.75 -0.2
423,326 - SGL_RS03885 0.78 +2.3
423,407 + SGL_RS03885 0.90 +0.0
423,533 - +0.1

Or see this region's nucleotide sequence