Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03495

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03490 and SGL_RS03495 are separated by 23 nucleotidesSGL_RS03495 and SGL_RS03500 are separated by 99 nucleotidesSGL_RS03500 and SGL_RS03505 are separated by 65 nucleotides SGL_RS03490: SGL_RS03490 - YaaW family protein, at 343,863 to 344,720 _RS03490 SGL_RS03495: SGL_RS03495 - metal-binding protein, at 344,744 to 345,298 _RS03495 SGL_RS03500: SGL_RS03500 - tRNA-Val, at 345,398 to 345,470 _RS03500 SGL_RS03505: SGL_RS03505 - exopolysaccharide transport family protein, at 345,536 to 347,806 _RS03505 Position (kb) 344 345 346Strain fitness (log2 ratio) -2 -1 0 1at 344.079 kb on - strand, within SGL_RS03490at 344.095 kb on - strand, within SGL_RS03490at 344.254 kb on - strand, within SGL_RS03490at 344.273 kb on - strand, within SGL_RS03490at 344.385 kb on + strand, within SGL_RS03490at 344.597 kb on - strand, within SGL_RS03490at 344.613 kb on + strand, within SGL_RS03490at 344.684 kb on - strandat 344.842 kb on + strand, within SGL_RS03495at 344.850 kb on - strand, within SGL_RS03495at 344.913 kb on - strand, within SGL_RS03495at 344.965 kb on + strand, within SGL_RS03495at 345.178 kb on + strand, within SGL_RS03495at 345.265 kb on + strandat 345.305 kb on + strandat 345.605 kb on + strandat 345.605 kb on - strandat 345.882 kb on - strand, within SGL_RS03505at 345.977 kb on + strand, within SGL_RS03505at 346.174 kb on + strand, within SGL_RS03505at 346.205 kb on + strand, within SGL_RS03505at 346.231 kb on - strand, within SGL_RS03505at 346.272 kb on - strand, within SGL_RS03505at 346.276 kb on + strand, within SGL_RS03505

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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344,079 - SGL_RS03490 0.25 -1.2
344,095 - SGL_RS03490 0.27 -1.1
344,254 - SGL_RS03490 0.46 -1.4
344,273 - SGL_RS03490 0.48 -0.1
344,385 + SGL_RS03490 0.61 -1.3
344,597 - SGL_RS03490 0.86 -1.4
344,613 + SGL_RS03490 0.87 -1.1
344,684 - -1.1
344,842 + SGL_RS03495 0.18 +0.9
344,850 - SGL_RS03495 0.19 +0.9
344,913 - SGL_RS03495 0.30 +0.9
344,965 + SGL_RS03495 0.40 +0.2
345,178 + SGL_RS03495 0.78 +0.1
345,265 + -0.9
345,305 + -1.0
345,605 + +0.2
345,605 - +0.2
345,882 - SGL_RS03505 0.15 -1.2
345,977 + SGL_RS03505 0.19 -1.4
346,174 + SGL_RS03505 0.28 -1.1
346,205 + SGL_RS03505 0.29 -1.4
346,231 - SGL_RS03505 0.31 -2.1
346,272 - SGL_RS03505 0.32 +0.9
346,276 + SGL_RS03505 0.33 -1.4

Or see this region's nucleotide sequence