Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02355

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02345 and SGL_RS02350 are separated by 83 nucleotidesSGL_RS02350 and SGL_RS02355 are separated by 363 nucleotidesSGL_RS02355 and SGL_RS02360 are separated by 300 nucleotides SGL_RS02345: SGL_RS02345 - type II toxin-antitoxin system PrlF family antitoxin, at 110,392 to 110,724 _RS02345 SGL_RS02350: SGL_RS02350 - type II toxin-antitoxin system YhaV family toxin, at 110,808 to 111,224 _RS02350 SGL_RS02355: SGL_RS02355 - hypothetical protein, at 111,588 to 112,559 _RS02355 SGL_RS02360: SGL_RS02360 - O-antigen ligase, at 112,860 to 114,188 _RS02360 Position (kb) 111 112 113Strain fitness (log2 ratio) -1 0 1at 110.609 kb on - strand, within SGL_RS02345at 110.647 kb on - strand, within SGL_RS02345at 110.759 kb on + strandat 110.907 kb on + strand, within SGL_RS02350at 111.105 kb on + strand, within SGL_RS02350at 111.181 kb on - strand, within SGL_RS02350at 111.519 kb on - strandat 111.584 kb on + strandat 111.687 kb on + strand, within SGL_RS02355at 112.468 kb on - strandat 112.493 kb on - strandat 113.380 kb on + strand, within SGL_RS02360

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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110,609 - SGL_RS02345 0.65 +0.9
110,647 - SGL_RS02345 0.77 -0.8
110,759 + +0.3
110,907 + SGL_RS02350 0.24 +0.5
111,105 + SGL_RS02350 0.71 +0.4
111,181 - SGL_RS02350 0.89 +0.4
111,519 - -0.3
111,584 + +0.0
111,687 + SGL_RS02355 0.10 +0.3
112,468 - +0.2
112,493 - -1.1
113,380 + SGL_RS02360 0.39 -1.7

Or see this region's nucleotide sequence