Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01960

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01955 and SGL_RS01960 are separated by 242 nucleotidesSGL_RS01960 and SGL_RS01965 are separated by 17 nucleotidesSGL_RS01965 and SGL_RS01970 overlap by 4 nucleotides SGL_RS01955: SGL_RS01955 - AraC family transcriptional regulator, at 20,615 to 21,595 _RS01955 SGL_RS01960: SGL_RS01960 - MFS transporter, at 21,838 to 23,121 _RS01960 SGL_RS01965: SGL_RS01965 - sucrase ferredoxin, at 23,139 to 24,104 _RS01965 SGL_RS01970: SGL_RS01970 - iron-siderophore ABC transporter substrate-binding protein, at 24,101 to 25,003 _RS01970 Position (kb) 21 22 23 24Strain fitness (log2 ratio) -1 0 1at 20.850 kb on + strand, within SGL_RS01955at 20.861 kb on + strand, within SGL_RS01955at 20.901 kb on - strand, within SGL_RS01955at 20.985 kb on - strand, within SGL_RS01955at 21.268 kb on + strand, within SGL_RS01955at 21.268 kb on + strand, within SGL_RS01955at 21.282 kb on + strand, within SGL_RS01955at 21.299 kb on + strand, within SGL_RS01955at 21.390 kb on + strand, within SGL_RS01955at 21.398 kb on - strand, within SGL_RS01955at 21.398 kb on - strand, within SGL_RS01955at 21.464 kb on + strand, within SGL_RS01955at 21.567 kb on - strandat 21.692 kb on + strandat 21.902 kb on + strandat 21.905 kb on - strandat 21.905 kb on - strandat 21.979 kb on + strand, within SGL_RS01960at 22.099 kb on - strand, within SGL_RS01960at 22.689 kb on + strand, within SGL_RS01960at 23.226 kb on + strandat 23.339 kb on - strand, within SGL_RS01965at 23.849 kb on + strand, within SGL_RS01965at 23.992 kb on + strand, within SGL_RS01965at 24.000 kb on - strand, within SGL_RS01965

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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20,850 + SGL_RS01955 0.24 -0.0
20,861 + SGL_RS01955 0.25 -0.3
20,901 - SGL_RS01955 0.29 -0.0
20,985 - SGL_RS01955 0.38 +0.3
21,268 + SGL_RS01955 0.67 +0.6
21,268 + SGL_RS01955 0.67 +0.2
21,282 + SGL_RS01955 0.68 -0.1
21,299 + SGL_RS01955 0.70 +0.1
21,390 + SGL_RS01955 0.79 +0.0
21,398 - SGL_RS01955 0.80 +0.2
21,398 - SGL_RS01955 0.80 -0.5
21,464 + SGL_RS01955 0.87 -0.1
21,567 - -0.7
21,692 + +0.4
21,902 + -0.2
21,905 - -0.1
21,905 - -0.3
21,979 + SGL_RS01960 0.11 +0.0
22,099 - SGL_RS01960 0.20 +0.4
22,689 + SGL_RS01960 0.66 +0.4
23,226 + +0.2
23,339 - SGL_RS01965 0.21 -0.0
23,849 + SGL_RS01965 0.73 +0.2
23,992 + SGL_RS01965 0.88 +0.1
24,000 - SGL_RS01965 0.89 +0.0

Or see this region's nucleotide sequence