Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS01545 and SGL_RS01550 are separated by 6 nucleotides SGL_RS01550 and SGL_RS01555 overlap by 14 nucleotides SGL_RS01555 and SGL_RS01560 are separated by 123 nucleotides
SGL_RS01545: SGL_RS01545 - DUF305 domain-containing protein, at 34,784 to 35,374
_RS01545
SGL_RS01550: SGL_RS01550 - two-component system response regulator RppA, at 35,381 to 36,079
_RS01550
SGL_RS01555: SGL_RS01555 - two-component system sensor histidine kinase RppB, at 36,066 to 37,418
_RS01555
SGL_RS01560: SGL_RS01560 - efflux RND transporter periplasmic adaptor subunit, at 37,542 to 39,119
_RS01560
Position (kb) 36
37
38 Strain fitness (log2 ratio) -1
0
1 at 35.371 kb on + strand at 35.395 kb on + strand at 35.506 kb on + strand, within SGL_RS01550 at 36.064 kb on - strand at 36.102 kb on + strand at 36.113 kb on + strand at 36.239 kb on - strand, within SGL_RS01555 at 36.261 kb on - strand, within SGL_RS01555 at 36.270 kb on - strand, within SGL_RS01555 at 37.285 kb on + strand at 37.292 kb on - strand at 37.292 kb on - strand at 37.292 kb on - strand at 37.292 kb on - strand at 37.292 kb on - strand at 37.320 kb on + strand at 37.330 kb on - strand at 37.333 kb on + strand at 37.339 kb on - strand at 37.341 kb on + strand at 37.386 kb on + strand at 37.505 kb on + strand at 37.508 kb on - strand at 37.513 kb on - strand at 37.520 kb on - strand at 37.531 kb on - strand at 37.532 kb on - strand at 37.557 kb on + strand at 37.565 kb on - strand at 37.565 kb on - strand at 37.572 kb on + strand at 37.622 kb on - strand at 37.622 kb on - strand at 37.622 kb on - strand at 37.627 kb on - strand at 37.687 kb on + strand at 37.800 kb on - strand, within SGL_RS01560 at 37.804 kb on + strand, within SGL_RS01560 at 37.838 kb on - strand, within SGL_RS01560 at 37.856 kb on + strand, within SGL_RS01560 at 37.862 kb on - strand, within SGL_RS01560 at 37.877 kb on - strand, within SGL_RS01560 at 37.910 kb on + strand, within SGL_RS01560 at 37.918 kb on - strand, within SGL_RS01560 at 37.970 kb on + strand, within SGL_RS01560 at 37.978 kb on - strand, within SGL_RS01560 at 38.020 kb on - strand, within SGL_RS01560 at 38.088 kb on + strand, within SGL_RS01560 at 38.096 kb on - strand, within SGL_RS01560 at 38.128 kb on + strand, within SGL_RS01560 at 38.176 kb on - strand, within SGL_RS01560 at 38.178 kb on + strand, within SGL_RS01560 at 38.186 kb on - strand, within SGL_RS01560 at 38.186 kb on - strand, within SGL_RS01560 at 38.186 kb on - strand, within SGL_RS01560 at 38.186 kb on - strand, within SGL_RS01560 at 38.186 kb on - strand, within SGL_RS01560 at 38.344 kb on - strand, within SGL_RS01560 at 38.369 kb on - strand, within SGL_RS01560 at 38.387 kb on + strand, within SGL_RS01560 at 38.387 kb on + strand, within SGL_RS01560
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation remove 35,371 + +0.2 35,395 + +0.2 35,506 + SGL_RS01550 0.18 +0.2 36,064 - -0.4 36,102 + -0.3 36,113 + +0.2 36,239 - SGL_RS01555 0.13 +0.3 36,261 - SGL_RS01555 0.14 +0.4 36,270 - SGL_RS01555 0.15 +0.1 37,285 + +0.5 37,292 - -0.1 37,292 - +0.3 37,292 - +0.2 37,292 - -0.2 37,292 - +0.1 37,320 + -0.4 37,330 - -0.2 37,333 + +0.9 37,339 - +0.7 37,341 + +0.2 37,386 + -1.0 37,505 + -0.1 37,508 - -0.3 37,513 - -0.3 37,520 - -0.2 37,531 - -0.1 37,532 - -0.1 37,557 + -0.4 37,565 - +0.3 37,565 - -0.1 37,572 + -0.0 37,622 - -0.2 37,622 - -0.1 37,622 - +1.3 37,627 - +0.2 37,687 + -0.2 37,800 - SGL_RS01560 0.16 -0.8 37,804 + SGL_RS01560 0.17 -0.1 37,838 - SGL_RS01560 0.19 -0.1 37,856 + SGL_RS01560 0.20 +0.2 37,862 - SGL_RS01560 0.20 +0.2 37,877 - SGL_RS01560 0.21 -0.1 37,910 + SGL_RS01560 0.23 +0.5 37,918 - SGL_RS01560 0.24 -0.1 37,970 + SGL_RS01560 0.27 +0.1 37,978 - SGL_RS01560 0.28 -0.3 38,020 - SGL_RS01560 0.30 -0.2 38,088 + SGL_RS01560 0.35 -1.6 38,096 - SGL_RS01560 0.35 -0.3 38,128 + SGL_RS01560 0.37 -0.2 38,176 - SGL_RS01560 0.40 +0.2 38,178 + SGL_RS01560 0.40 -0.2 38,186 - SGL_RS01560 0.41 +0.7 38,186 - SGL_RS01560 0.41 -0.1 38,186 - SGL_RS01560 0.41 -0.1 38,186 - SGL_RS01560 0.41 -0.1 38,186 - SGL_RS01560 0.41 +0.0 38,344 - SGL_RS01560 0.51 -0.1 38,369 - SGL_RS01560 0.52 -0.7 38,387 + SGL_RS01560 0.54 -0.3 38,387 + SGL_RS01560 0.54 -0.1
Or see this region's nucleotide sequence