Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00390

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00385 and SGL_RS00390 are separated by 252 nucleotidesSGL_RS00390 and SGL_RS00395 are separated by 56 nucleotidesSGL_RS00395 and SGL_RS00400 are separated by 82 nucleotides SGL_RS00385: SGL_RS00385 - AAA family ATPase, at 82,309 to 84,186 _RS00385 SGL_RS00390: SGL_RS00390 - thermonuclease family protein, at 84,439 to 85,110 _RS00390 SGL_RS00395: SGL_RS00395 - hypothetical protein, at 85,167 to 85,469 _RS00395 SGL_RS00400: SGL_RS00400 - PLP-dependent aminotransferase family protein, at 85,552 to 86,997 _RS00400 Position (kb) 84 85 86Strain fitness (log2 ratio) -1 0 1at 83.649 kb on - strand, within SGL_RS00385at 83.657 kb on + strand, within SGL_RS00385at 83.877 kb on - strand, within SGL_RS00385at 84.034 kb on - strandat 84.055 kb on - strandat 84.408 kb on + strandat 84.540 kb on + strand, within SGL_RS00390at 84.548 kb on - strand, within SGL_RS00390at 84.563 kb on + strand, within SGL_RS00390at 84.563 kb on + strand, within SGL_RS00390at 84.632 kb on - strand, within SGL_RS00390at 84.766 kb on - strand, within SGL_RS00390at 85.161 kb on - strandat 85.290 kb on + strand, within SGL_RS00395at 85.298 kb on - strand, within SGL_RS00395at 85.381 kb on - strand, within SGL_RS00395at 85.678 kb on + strandat 86.042 kb on - strand, within SGL_RS00400

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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83,649 - SGL_RS00385 0.71 +0.1
83,657 + SGL_RS00385 0.72 -0.5
83,877 - SGL_RS00385 0.83 +0.3
84,034 - +0.2
84,055 - -0.1
84,408 + -0.1
84,540 + SGL_RS00390 0.15 +0.1
84,548 - SGL_RS00390 0.16 +0.3
84,563 + SGL_RS00390 0.18 +0.0
84,563 + SGL_RS00390 0.18 +1.2
84,632 - SGL_RS00390 0.29 +0.6
84,766 - SGL_RS00390 0.49 +0.2
85,161 - +0.0
85,290 + SGL_RS00395 0.41 -0.2
85,298 - SGL_RS00395 0.43 -0.1
85,381 - SGL_RS00395 0.71 +0.1
85,678 + +1.1
86,042 - SGL_RS00400 0.34 +0.0

Or see this region's nucleotide sequence