Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00175

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00170 and SGL_RS00175 are separated by 292 nucleotidesSGL_RS00175 and SGL_RS00180 are separated by 176 nucleotidesSGL_RS00180 and SGL_RS00185 are separated by 21 nucleotides SGL_RS00170: SGL_RS00170 - chromate efflux transporter, at 36,906 to 38,144 _RS00170 SGL_RS00175: SGL_RS00175 - hypothetical protein, at 38,437 to 38,730 _RS00175 SGL_RS00180: SGL_RS00180 - IS5 family transposase, at 38,907 to 39,641 _RS00180 SGL_RS00185: SGL_RS00185 - transposase, at 39,663 to 40,259 _RS00185 Position (kb) 38 39Strain fitness (log2 ratio) -1 0 1at 37.438 kb on + strand, within SGL_RS00170at 37.550 kb on + strand, within SGL_RS00170at 37.558 kb on - strand, within SGL_RS00170at 37.558 kb on - strand, within SGL_RS00170at 37.603 kb on - strand, within SGL_RS00170at 37.748 kb on + strand, within SGL_RS00170at 37.753 kb on + strand, within SGL_RS00170at 37.761 kb on - strand, within SGL_RS00170at 38.229 kb on + strandat 38.430 kb on + strandat 38.521 kb on + strand, within SGL_RS00175at 38.714 kb on - strandat 38.774 kb on - strandat 39.194 kb on + strand, within SGL_RS00180at 39.666 kb on + strandat 39.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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37,438 + SGL_RS00170 0.43 -1.2
37,550 + SGL_RS00170 0.52 +0.1
37,558 - SGL_RS00170 0.53 +0.1
37,558 - SGL_RS00170 0.53 -0.5
37,603 - SGL_RS00170 0.56 -0.0
37,748 + SGL_RS00170 0.68 +0.3
37,753 + SGL_RS00170 0.68 -0.1
37,761 - SGL_RS00170 0.69 -0.1
38,229 + +0.0
38,430 + +0.1
38,521 + SGL_RS00175 0.29 +0.2
38,714 - +0.4
38,774 - +0.0
39,194 + SGL_RS00180 0.39 -0.3
39,666 + +0.2
39,719 - +0.2

Or see this region's nucleotide sequence