Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19535

Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS19530 and SGL_RS19535 are separated by 13 nucleotidesSGL_RS19535 and SGL_RS01815 overlap by 8 nucleotides SGL_RS19530: SGL_RS19530 - class I SAM-dependent DNA methyltransferase, at 88,430 to 89,968 _RS19530 SGL_RS19535: SGL_RS19535 - hypothetical protein, at 89,982 to 91,103 _RS19535 SGL_RS01815: SGL_RS01815 - restriction endonuclease subunit S, at 91,096 to 92,280 _RS01815 Position (kb) 89 90 91 92Strain fitness (log2 ratio) -1 0 1 2at 89.028 kb on + strand, within SGL_RS19530at 89.103 kb on - strand, within SGL_RS19530at 89.110 kb on - strand, within SGL_RS19530at 89.110 kb on - strand, within SGL_RS19530at 89.152 kb on + strand, within SGL_RS19530at 89.157 kb on - strand, within SGL_RS19530at 89.172 kb on - strand, within SGL_RS19530at 89.202 kb on + strand, within SGL_RS19530at 89.202 kb on + strand, within SGL_RS19530at 89.210 kb on - strand, within SGL_RS19530at 89.239 kb on + strand, within SGL_RS19530at 89.251 kb on + strand, within SGL_RS19530at 89.267 kb on + strand, within SGL_RS19530at 89.374 kb on - strand, within SGL_RS19530at 89.429 kb on - strand, within SGL_RS19530at 89.458 kb on - strand, within SGL_RS19530at 89.518 kb on + strand, within SGL_RS19530at 89.662 kb on + strand, within SGL_RS19530at 89.662 kb on + strand, within SGL_RS19530at 89.670 kb on - strand, within SGL_RS19530at 89.970 kb on - strandat 90.018 kb on - strandat 90.077 kb on + strandat 90.138 kb on + strand, within SGL_RS19535at 90.236 kb on + strand, within SGL_RS19535at 90.264 kb on + strand, within SGL_RS19535at 90.265 kb on + strand, within SGL_RS19535at 90.365 kb on + strand, within SGL_RS19535at 90.371 kb on + strand, within SGL_RS19535at 90.373 kb on - strand, within SGL_RS19535at 90.469 kb on + strand, within SGL_RS19535at 90.487 kb on - strand, within SGL_RS19535at 90.502 kb on + strand, within SGL_RS19535at 90.557 kb on + strand, within SGL_RS19535at 90.563 kb on + strand, within SGL_RS19535at 90.637 kb on - strand, within SGL_RS19535at 90.640 kb on + strand, within SGL_RS19535at 90.786 kb on - strand, within SGL_RS19535at 90.828 kb on + strand, within SGL_RS19535at 90.828 kb on + strand, within SGL_RS19535at 90.829 kb on - strand, within SGL_RS19535at 90.855 kb on + strand, within SGL_RS19535at 90.863 kb on + strand, within SGL_RS19535at 90.878 kb on + strand, within SGL_RS19535at 90.885 kb on - strand, within SGL_RS19535at 90.891 kb on + strand, within SGL_RS19535at 91.561 kb on + strand, within SGL_RS01815at 91.582 kb on + strand, within SGL_RS01815at 91.582 kb on + strand, within SGL_RS01815at 91.590 kb on - strand, within SGL_RS01815at 91.590 kb on - strand, within SGL_RS01815at 91.626 kb on - strand, within SGL_RS01815at 91.633 kb on + strand, within SGL_RS01815at 91.653 kb on + strand, within SGL_RS01815at 91.679 kb on + strand, within SGL_RS01815at 91.687 kb on - strand, within SGL_RS01815

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
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89,028 + SGL_RS19530 0.39 +0.3
89,103 - SGL_RS19530 0.44 -0.0
89,110 - SGL_RS19530 0.44 +0.5
89,110 - SGL_RS19530 0.44 +1.1
89,152 + SGL_RS19530 0.47 -0.5
89,157 - SGL_RS19530 0.47 +1.3
89,172 - SGL_RS19530 0.48 +0.7
89,202 + SGL_RS19530 0.50 +0.8
89,202 + SGL_RS19530 0.50 +0.0
89,210 - SGL_RS19530 0.51 +0.9
89,239 + SGL_RS19530 0.53 +0.2
89,251 + SGL_RS19530 0.53 +1.1
89,267 + SGL_RS19530 0.54 -0.5
89,374 - SGL_RS19530 0.61 +0.1
89,429 - SGL_RS19530 0.65 -0.2
89,458 - SGL_RS19530 0.67 +0.6
89,518 + SGL_RS19530 0.71 -1.6
89,662 + SGL_RS19530 0.80 +0.4
89,662 + SGL_RS19530 0.80 +0.8
89,670 - SGL_RS19530 0.81 +0.7
89,970 - +0.8
90,018 - +0.3
90,077 + +0.3
90,138 + SGL_RS19535 0.14 +0.9
90,236 + SGL_RS19535 0.23 +1.1
90,264 + SGL_RS19535 0.25 +1.1
90,265 + SGL_RS19535 0.25 -0.1
90,365 + SGL_RS19535 0.34 +0.9
90,371 + SGL_RS19535 0.35 +0.5
90,373 - SGL_RS19535 0.35 +1.6
90,469 + SGL_RS19535 0.43 -0.6
90,487 - SGL_RS19535 0.45 +0.7
90,502 + SGL_RS19535 0.46 +0.6
90,557 + SGL_RS19535 0.51 +0.8
90,563 + SGL_RS19535 0.52 +0.5
90,637 - SGL_RS19535 0.58 +1.0
90,640 + SGL_RS19535 0.59 +0.3
90,786 - SGL_RS19535 0.72 +0.6
90,828 + SGL_RS19535 0.75 +1.1
90,828 + SGL_RS19535 0.75 +0.4
90,829 - SGL_RS19535 0.75 -0.1
90,855 + SGL_RS19535 0.78 +0.5
90,863 + SGL_RS19535 0.79 +1.1
90,878 + SGL_RS19535 0.80 +0.4
90,885 - SGL_RS19535 0.80 +1.3
90,891 + SGL_RS19535 0.81 +2.1
91,561 + SGL_RS01815 0.39 +0.8
91,582 + SGL_RS01815 0.41 +0.4
91,582 + SGL_RS01815 0.41 +0.2
91,590 - SGL_RS01815 0.42 +0.0
91,590 - SGL_RS01815 0.42 +1.2
91,626 - SGL_RS01815 0.45 +0.1
91,633 + SGL_RS01815 0.45 +0.5
91,653 + SGL_RS01815 0.47 +0.3
91,679 + SGL_RS01815 0.49 +0.1
91,687 - SGL_RS01815 0.50 +1.5

Or see this region's nucleotide sequence