Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17180 and SGL_RS17185 are separated by 104 nucleotides SGL_RS17185 and SGL_RS17190 are separated by 55 nucleotides
SGL_RS17180: SGL_RS17180 - DEAD/DEAH box helicase, at 3,305,654 to 3,308,773
_RS17180
SGL_RS17185: SGL_RS17185 - rhomboid family intramembrane serine protease, at 3,308,878 to 3,309,474
_RS17185
SGL_RS17190: SGL_RS17190 - PP2C family protein-serine/threonine phosphatase, at 3,309,530 to 3,311,431
_RS17190
Position (kb)
3308
3309
3310 Strain fitness (log2 ratio)
-1
0
1 at 3307.916 kb on + strand, within SGL_RS17180 at 3308.035 kb on + strand, within SGL_RS17180 at 3308.074 kb on - strand, within SGL_RS17180 at 3308.166 kb on - strand, within SGL_RS17180 at 3308.166 kb on - strand, within SGL_RS17180 at 3308.307 kb on + strand, within SGL_RS17180 at 3308.329 kb on - strand, within SGL_RS17180 at 3308.350 kb on - strand, within SGL_RS17180 at 3308.407 kb on - strand, within SGL_RS17180 at 3308.443 kb on + strand, within SGL_RS17180 at 3308.451 kb on - strand, within SGL_RS17180 at 3308.512 kb on - strand at 3308.522 kb on + strand at 3308.577 kb on - strand at 3308.972 kb on + strand, within SGL_RS17185 at 3309.135 kb on + strand, within SGL_RS17185 at 3309.224 kb on - strand, within SGL_RS17185 at 3309.369 kb on - strand, within SGL_RS17185 at 3309.454 kb on + strand at 3309.566 kb on - strand at 3309.646 kb on - strand at 3309.686 kb on - strand at 3309.723 kb on + strand, within SGL_RS17190 at 3309.723 kb on + strand, within SGL_RS17190 at 3309.723 kb on + strand, within SGL_RS17190 at 3309.731 kb on - strand, within SGL_RS17190 at 3309.731 kb on - strand, within SGL_RS17190 at 3309.817 kb on + strand, within SGL_RS17190 at 3310.240 kb on - strand, within SGL_RS17190 at 3310.428 kb on + strand, within SGL_RS17190
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation remove 3,307,916 + SGL_RS17180 0.72 -0.1 3,308,035 + SGL_RS17180 0.76 +0.2 3,308,074 - SGL_RS17180 0.78 +0.3 3,308,166 - SGL_RS17180 0.81 +1.1 3,308,166 - SGL_RS17180 0.81 +0.4 3,308,307 + SGL_RS17180 0.85 +0.3 3,308,329 - SGL_RS17180 0.86 +1.0 3,308,350 - SGL_RS17180 0.86 +0.2 3,308,407 - SGL_RS17180 0.88 +0.0 3,308,443 + SGL_RS17180 0.89 +0.5 3,308,451 - SGL_RS17180 0.90 +0.5 3,308,512 - +0.3 3,308,522 + -0.0 3,308,577 - +0.3 3,308,972 + SGL_RS17185 0.16 +0.9 3,309,135 + SGL_RS17185 0.43 +1.6 3,309,224 - SGL_RS17185 0.58 +0.6 3,309,369 - SGL_RS17185 0.82 +0.5 3,309,454 + +1.0 3,309,566 - -0.9 3,309,646 - +0.6 3,309,686 - -0.7 3,309,723 + SGL_RS17190 0.10 +0.5 3,309,723 + SGL_RS17190 0.10 +0.1 3,309,723 + SGL_RS17190 0.10 +0.9 3,309,731 - SGL_RS17190 0.11 -0.5 3,309,731 - SGL_RS17190 0.11 +0.5 3,309,817 + SGL_RS17190 0.15 -0.3 3,310,240 - SGL_RS17190 0.37 +0.3 3,310,428 + SGL_RS17190 0.47 -0.0
Or see this region's nucleotide sequence