Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17185

Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17180 and SGL_RS17185 are separated by 104 nucleotidesSGL_RS17185 and SGL_RS17190 are separated by 55 nucleotides SGL_RS17180: SGL_RS17180 - DEAD/DEAH box helicase, at 3,305,654 to 3,308,773 _RS17180 SGL_RS17185: SGL_RS17185 - rhomboid family intramembrane serine protease, at 3,308,878 to 3,309,474 _RS17185 SGL_RS17190: SGL_RS17190 - PP2C family protein-serine/threonine phosphatase, at 3,309,530 to 3,311,431 _RS17190 Position (kb) 3308 3309 3310Strain fitness (log2 ratio) -1 0 1at 3307.916 kb on + strand, within SGL_RS17180at 3308.035 kb on + strand, within SGL_RS17180at 3308.074 kb on - strand, within SGL_RS17180at 3308.166 kb on - strand, within SGL_RS17180at 3308.166 kb on - strand, within SGL_RS17180at 3308.307 kb on + strand, within SGL_RS17180at 3308.329 kb on - strand, within SGL_RS17180at 3308.350 kb on - strand, within SGL_RS17180at 3308.407 kb on - strand, within SGL_RS17180at 3308.443 kb on + strand, within SGL_RS17180at 3308.451 kb on - strand, within SGL_RS17180at 3308.512 kb on - strandat 3308.522 kb on + strandat 3308.577 kb on - strandat 3308.972 kb on + strand, within SGL_RS17185at 3309.135 kb on + strand, within SGL_RS17185at 3309.224 kb on - strand, within SGL_RS17185at 3309.369 kb on - strand, within SGL_RS17185at 3309.454 kb on + strandat 3309.566 kb on - strandat 3309.646 kb on - strandat 3309.686 kb on - strandat 3309.723 kb on + strand, within SGL_RS17190at 3309.723 kb on + strand, within SGL_RS17190at 3309.723 kb on + strand, within SGL_RS17190at 3309.731 kb on - strand, within SGL_RS17190at 3309.731 kb on - strand, within SGL_RS17190at 3309.817 kb on + strand, within SGL_RS17190at 3310.240 kb on - strand, within SGL_RS17190at 3310.428 kb on + strand, within SGL_RS17190

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
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3,307,916 + SGL_RS17180 0.72 -0.1
3,308,035 + SGL_RS17180 0.76 +0.2
3,308,074 - SGL_RS17180 0.78 +0.3
3,308,166 - SGL_RS17180 0.81 +1.1
3,308,166 - SGL_RS17180 0.81 +0.4
3,308,307 + SGL_RS17180 0.85 +0.3
3,308,329 - SGL_RS17180 0.86 +1.0
3,308,350 - SGL_RS17180 0.86 +0.2
3,308,407 - SGL_RS17180 0.88 +0.0
3,308,443 + SGL_RS17180 0.89 +0.5
3,308,451 - SGL_RS17180 0.90 +0.5
3,308,512 - +0.3
3,308,522 + -0.0
3,308,577 - +0.3
3,308,972 + SGL_RS17185 0.16 +0.9
3,309,135 + SGL_RS17185 0.43 +1.6
3,309,224 - SGL_RS17185 0.58 +0.6
3,309,369 - SGL_RS17185 0.82 +0.5
3,309,454 + +1.0
3,309,566 - -0.9
3,309,646 - +0.6
3,309,686 - -0.7
3,309,723 + SGL_RS17190 0.10 +0.5
3,309,723 + SGL_RS17190 0.10 +0.1
3,309,723 + SGL_RS17190 0.10 +0.9
3,309,731 - SGL_RS17190 0.11 -0.5
3,309,731 - SGL_RS17190 0.11 +0.5
3,309,817 + SGL_RS17190 0.15 -0.3
3,310,240 - SGL_RS17190 0.37 +0.3
3,310,428 + SGL_RS17190 0.47 -0.0

Or see this region's nucleotide sequence