Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16840

Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16835 and SGL_RS16840 are separated by 22 nucleotidesSGL_RS16840 and SGL_RS16845 overlap by 4 nucleotidesSGL_RS16845 and SGL_RS16850 are separated by 6 nucleotides SGL_RS16835: SGL_RS16835 - ATP-binding protein, at 3,231,569 to 3,232,879 _RS16835 SGL_RS16840: SGL_RS16840 - TMEM165/GDT1 family protein, at 3,232,902 to 3,233,180 _RS16840 SGL_RS16845: SGL_RS16845 - ATP phosphoribosyltransferase, at 3,233,177 to 3,233,809 _RS16845 SGL_RS16850: SGL_RS16850 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 3,233,816 to 3,235,186 _RS16850 Position (kb) 3232 3233 3234Strain fitness (log2 ratio) -1 0 1at 3232.000 kb on + strand, within SGL_RS16835at 3232.391 kb on - strand, within SGL_RS16835at 3232.458 kb on + strand, within SGL_RS16835at 3232.619 kb on + strand, within SGL_RS16835at 3232.719 kb on - strand, within SGL_RS16835at 3232.869 kb on - strandat 3232.869 kb on - strandat 3233.082 kb on - strand, within SGL_RS16840at 3233.618 kb on - strand, within SGL_RS16845

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
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3,232,000 + SGL_RS16835 0.33 +0.0
3,232,391 - SGL_RS16835 0.63 -0.4
3,232,458 + SGL_RS16835 0.68 +0.3
3,232,619 + SGL_RS16835 0.80 -0.2
3,232,719 - SGL_RS16835 0.88 +0.2
3,232,869 - -0.2
3,232,869 - -0.1
3,233,082 - SGL_RS16840 0.65 +1.5
3,233,618 - SGL_RS16845 0.70 -1.5

Or see this region's nucleotide sequence