Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16055

Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16050 and SGL_RS16055 overlap by 4 nucleotidesSGL_RS16055 and SGL_RS16060 are separated by 121 nucleotidesSGL_RS16060 and SGL_RS16065 are separated by 38 nucleotides SGL_RS16050: SGL_RS16050 - two-component system sensor histidine kinase RppB, at 3,048,902 to 3,050,266 _RS16050 SGL_RS16055: SGL_RS16055 - two-component system response regulator RppA, at 3,050,263 to 3,050,967 _RS16055 SGL_RS16060: SGL_RS16060 - efflux RND transporter periplasmic adaptor subunit, at 3,051,089 to 3,051,733 _RS16060 SGL_RS16065: SGL_RS16065 - CusA/CzcA family heavy metal efflux RND transporter, at 3,051,772 to 3,054,936 _RS16065 Position (kb) 3050 3051Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 3049.273 kb on - strand, within SGL_RS16050at 3049.444 kb on - strand, within SGL_RS16050at 3049.470 kb on + strand, within SGL_RS16050at 3049.478 kb on - strand, within SGL_RS16050at 3049.480 kb on - strand, within SGL_RS16050at 3049.490 kb on - strand, within SGL_RS16050at 3049.490 kb on - strand, within SGL_RS16050at 3049.522 kb on - strand, within SGL_RS16050at 3049.543 kb on - strand, within SGL_RS16050at 3049.547 kb on + strand, within SGL_RS16050at 3049.555 kb on - strand, within SGL_RS16050at 3049.573 kb on - strand, within SGL_RS16050at 3049.651 kb on - strand, within SGL_RS16050at 3049.724 kb on + strand, within SGL_RS16050at 3049.838 kb on - strand, within SGL_RS16050at 3049.991 kb on + strand, within SGL_RS16050at 3049.991 kb on + strand, within SGL_RS16050at 3049.992 kb on + strand, within SGL_RS16050at 3049.995 kb on - strand, within SGL_RS16050at 3049.995 kb on - strand, within SGL_RS16050at 3050.000 kb on - strand, within SGL_RS16050at 3050.067 kb on + strand, within SGL_RS16050at 3050.067 kb on - strand, within SGL_RS16050at 3050.083 kb on + strand, within SGL_RS16050at 3050.083 kb on + strand, within SGL_RS16050at 3050.083 kb on + strand, within SGL_RS16050at 3050.137 kb on - strandat 3050.150 kb on - strandat 3050.150 kb on - strandat 3050.178 kb on - strandat 3050.183 kb on - strandat 3050.193 kb on - strandat 3050.268 kb on + strandat 3050.287 kb on + strandat 3050.378 kb on - strand, within SGL_RS16055at 3050.439 kb on + strand, within SGL_RS16055at 3050.552 kb on - strand, within SGL_RS16055at 3050.564 kb on - strand, within SGL_RS16055at 3050.570 kb on - strand, within SGL_RS16055at 3050.619 kb on - strand, within SGL_RS16055at 3050.621 kb on - strand, within SGL_RS16055at 3050.755 kb on - strand, within SGL_RS16055at 3050.786 kb on - strand, within SGL_RS16055at 3050.824 kb on + strand, within SGL_RS16055at 3050.824 kb on + strand, within SGL_RS16055at 3050.832 kb on - strand, within SGL_RS16055at 3050.832 kb on - strand, within SGL_RS16055at 3050.892 kb on - strand, within SGL_RS16055at 3051.044 kb on - strandat 3051.044 kb on - strandat 3051.083 kb on + strandat 3051.275 kb on - strand, within SGL_RS16060at 3051.285 kb on - strand, within SGL_RS16060at 3051.352 kb on + strand, within SGL_RS16060at 3051.403 kb on - strand, within SGL_RS16060at 3051.403 kb on - strand, within SGL_RS16060at 3051.505 kb on + strand, within SGL_RS16060at 3051.586 kb on + strand, within SGL_RS16060at 3051.651 kb on + strand, within SGL_RS16060at 3051.651 kb on + strand, within SGL_RS16060at 3051.659 kb on - strand, within SGL_RS16060at 3051.828 kb on - strandat 3051.832 kb on - strandat 3051.872 kb on - strandat 3051.887 kb on + strandat 3051.955 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
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3,049,273 - SGL_RS16050 0.27 +5.3
3,049,444 - SGL_RS16050 0.40 +5.4
3,049,470 + SGL_RS16050 0.42 +5.1
3,049,478 - SGL_RS16050 0.42 +4.8
3,049,480 - SGL_RS16050 0.42 +5.3
3,049,490 - SGL_RS16050 0.43 +5.3
3,049,490 - SGL_RS16050 0.43 +5.1
3,049,522 - SGL_RS16050 0.45 +4.8
3,049,543 - SGL_RS16050 0.47 +5.2
3,049,547 + SGL_RS16050 0.47 +5.2
3,049,555 - SGL_RS16050 0.48 +5.1
3,049,573 - SGL_RS16050 0.49 +5.1
3,049,651 - SGL_RS16050 0.55 +5.6
3,049,724 + SGL_RS16050 0.60 +5.2
3,049,838 - SGL_RS16050 0.69 +5.2
3,049,991 + SGL_RS16050 0.80 +5.4
3,049,991 + SGL_RS16050 0.80 +5.1
3,049,992 + SGL_RS16050 0.80 +5.2
3,049,995 - SGL_RS16050 0.80 +5.3
3,049,995 - SGL_RS16050 0.80 +5.4
3,050,000 - SGL_RS16050 0.80 +4.9
3,050,067 + SGL_RS16050 0.85 +5.2
3,050,067 - SGL_RS16050 0.85 +4.5
3,050,083 + SGL_RS16050 0.87 +5.5
3,050,083 + SGL_RS16050 0.87 +5.1
3,050,083 + SGL_RS16050 0.87 +5.3
3,050,137 - +5.1
3,050,150 - +5.4
3,050,150 - +5.3
3,050,178 - +6.1
3,050,183 - +5.5
3,050,193 - +5.2
3,050,268 + +3.5
3,050,287 + +5.1
3,050,378 - SGL_RS16055 0.16 +4.5
3,050,439 + SGL_RS16055 0.25 +5.0
3,050,552 - SGL_RS16055 0.41 +5.3
3,050,564 - SGL_RS16055 0.43 +5.4
3,050,570 - SGL_RS16055 0.44 +5.0
3,050,619 - SGL_RS16055 0.50 +5.3
3,050,621 - SGL_RS16055 0.51 +5.2
3,050,755 - SGL_RS16055 0.70 +5.2
3,050,786 - SGL_RS16055 0.74 +4.6
3,050,824 + SGL_RS16055 0.80 +5.1
3,050,824 + SGL_RS16055 0.80 +5.1
3,050,832 - SGL_RS16055 0.81 +5.3
3,050,832 - SGL_RS16055 0.81 +5.0
3,050,892 - SGL_RS16055 0.89 +5.3
3,051,044 - +5.3
3,051,044 - +5.0
3,051,083 + +5.4
3,051,275 - SGL_RS16060 0.29 +5.5
3,051,285 - SGL_RS16060 0.30 +5.4
3,051,352 + SGL_RS16060 0.41 +5.4
3,051,403 - SGL_RS16060 0.49 +5.5
3,051,403 - SGL_RS16060 0.49 +5.3
3,051,505 + SGL_RS16060 0.64 +4.9
3,051,586 + SGL_RS16060 0.77 +5.1
3,051,651 + SGL_RS16060 0.87 +5.5
3,051,651 + SGL_RS16060 0.87 +5.6
3,051,659 - SGL_RS16060 0.88 +5.4
3,051,828 - +1.9
3,051,832 - +1.9
3,051,872 - +1.9
3,051,887 + +2.0
3,051,955 - +1.0

Or see this region's nucleotide sequence