Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15290

Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15280 and SGL_RS15285 are separated by 109 nucleotidesSGL_RS15285 and SGL_RS15290 are separated by 216 nucleotidesSGL_RS15290 and SGL_RS15295 are separated by 222 nucleotides SGL_RS15280: SGL_RS15280 - HAD family hydrolase, at 2,879,286 to 2,879,855 _RS15280 SGL_RS15285: SGL_RS15285 - D-sedoheptulose 7-phosphate isomerase, at 2,879,965 to 2,880,549 _RS15285 SGL_RS15290: SGL_RS15290 - 6-carboxytetrahydropterin synthase QueD, at 2,880,766 to 2,881,155 _RS15290 SGL_RS15295: SGL_RS15295 - GspE/PulE family protein, at 2,881,378 to 2,883,819 _RS15295 Position (kb) 2880 2881 2882Strain fitness (log2 ratio) -1 0 1at 2879.925 kb on + strandat 2880.731 kb on + strandat 2880.746 kb on - strandat 2880.802 kb on + strandat 2880.934 kb on - strand, within SGL_RS15290at 2880.980 kb on + strand, within SGL_RS15290at 2880.998 kb on - strand, within SGL_RS15290at 2881.011 kb on - strand, within SGL_RS15290at 2881.044 kb on - strand, within SGL_RS15290at 2881.103 kb on + strand, within SGL_RS15290at 2881.337 kb on - strandat 2881.337 kb on - strandat 2881.345 kb on - strandat 2881.383 kb on - strandat 2881.652 kb on + strand, within SGL_RS15295at 2881.652 kb on - strand, within SGL_RS15295at 2881.652 kb on - strand, within SGL_RS15295at 2881.712 kb on + strand, within SGL_RS15295at 2881.721 kb on - strand, within SGL_RS15295at 2881.831 kb on - strand, within SGL_RS15295at 2881.831 kb on - strand, within SGL_RS15295at 2881.831 kb on - strand, within SGL_RS15295at 2881.838 kb on + strand, within SGL_RS15295at 2882.028 kb on - strand, within SGL_RS15295at 2882.094 kb on + strand, within SGL_RS15295at 2882.149 kb on - strand, within SGL_RS15295

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
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2,879,925 + +0.1
2,880,731 + +0.6
2,880,746 - +0.1
2,880,802 + +0.6
2,880,934 - SGL_RS15290 0.43 +1.7
2,880,980 + SGL_RS15290 0.55 +0.6
2,880,998 - SGL_RS15290 0.59 +1.5
2,881,011 - SGL_RS15290 0.63 +0.5
2,881,044 - SGL_RS15290 0.71 +1.0
2,881,103 + SGL_RS15290 0.86 +1.3
2,881,337 - +1.2
2,881,337 - +0.1
2,881,345 - +0.3
2,881,383 - +0.7
2,881,652 + SGL_RS15295 0.11 +0.9
2,881,652 - SGL_RS15295 0.11 +0.5
2,881,652 - SGL_RS15295 0.11 +0.7
2,881,712 + SGL_RS15295 0.14 +0.1
2,881,721 - SGL_RS15295 0.14 +0.5
2,881,831 - SGL_RS15295 0.19 +0.5
2,881,831 - SGL_RS15295 0.19 +0.3
2,881,831 - SGL_RS15295 0.19 -0.0
2,881,838 + SGL_RS15295 0.19 +0.4
2,882,028 - SGL_RS15295 0.27 +0.2
2,882,094 + SGL_RS15295 0.29 +0.5
2,882,149 - SGL_RS15295 0.32 +0.4

Or see this region's nucleotide sequence