Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15205 and SGL_RS15210 are separated by 166 nucleotides SGL_RS15210 and SGL_RS15215 are separated by 163 nucleotides SGL_RS15215 and SGL_RS15220 are separated by 61 nucleotides
SGL_RS15205: SGL_RS15205 - succinate dehydrogenase iron-sulfur subunit, at 2,861,101 to 2,861,838
_RS15205
SGL_RS15210: SGL_RS15210 - AbrB family transcriptional regulator, at 2,862,005 to 2,862,394
_RS15210
SGL_RS15215: SGL_RS15215 - RrF2 family transcriptional regulator, at 2,862,558 to 2,863,031
_RS15215
SGL_RS15220: SGL_RS15220 - diguanylate cyclase, at 2,863,093 to 2,866,923
_RS15220
Position (kb)
2862
2863
2864 Strain fitness (log2 ratio)
-1
0
1
2 at 2861.616 kb on + strand, within SGL_RS15205 at 2861.626 kb on + strand, within SGL_RS15205 at 2861.626 kb on + strand, within SGL_RS15205 at 2861.730 kb on + strand, within SGL_RS15205 at 2862.572 kb on + strand at 2862.706 kb on - strand, within SGL_RS15215 at 2862.890 kb on + strand, within SGL_RS15215 at 2863.148 kb on - strand at 2863.161 kb on - strand at 2863.176 kb on + strand at 2863.190 kb on + strand at 2863.190 kb on + strand at 2863.237 kb on - strand at 2863.390 kb on - strand at 2863.519 kb on - strand, within SGL_RS15220 at 2863.526 kb on + strand, within SGL_RS15220 at 2863.544 kb on - strand, within SGL_RS15220 at 2863.688 kb on - strand, within SGL_RS15220 at 2863.859 kb on - strand, within SGL_RS15220 at 2863.859 kb on - strand, within SGL_RS15220 at 2863.887 kb on + strand, within SGL_RS15220 at 2864.004 kb on + strand, within SGL_RS15220 at 2864.018 kb on - strand, within SGL_RS15220
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation remove 2,861,616 + SGL_RS15205 0.70 +0.2 2,861,626 + SGL_RS15205 0.71 -0.3 2,861,626 + SGL_RS15205 0.71 -0.2 2,861,730 + SGL_RS15205 0.85 -0.2 2,862,572 + -0.4 2,862,706 - SGL_RS15215 0.31 +1.2 2,862,890 + SGL_RS15215 0.70 +1.9 2,863,148 - +0.8 2,863,161 - -0.0 2,863,176 + +0.3 2,863,190 + -0.3 2,863,190 + +0.4 2,863,237 - +0.8 2,863,390 - -0.3 2,863,519 - SGL_RS15220 0.11 +0.5 2,863,526 + SGL_RS15220 0.11 -0.4 2,863,544 - SGL_RS15220 0.12 +0.4 2,863,688 - SGL_RS15220 0.16 +1.1 2,863,859 - SGL_RS15220 0.20 +0.7 2,863,859 - SGL_RS15220 0.20 +0.1 2,863,887 + SGL_RS15220 0.21 -0.5 2,864,004 + SGL_RS15220 0.24 +0.7 2,864,018 - SGL_RS15220 0.24 +0.2
Or see this region's nucleotide sequence