Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14160

Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14155 and SGL_RS14160 are separated by 342 nucleotidesSGL_RS14160 and SGL_RS14165 are separated by 4 nucleotidesSGL_RS14165 and SGL_RS14170 are separated by 1 nucleotides SGL_RS14155: SGL_RS14155 - cation:proton antiporter, at 2,632,124 to 2,633,509 _RS14155 SGL_RS14160: SGL_RS14160 - anti-sigma factor, at 2,633,852 to 2,634,655 _RS14160 SGL_RS14165: SGL_RS14165 - sigma-70 family RNA polymerase sigma factor, at 2,634,660 to 2,635,217 _RS14165 SGL_RS14170: SGL_RS14170 - cytochrome c biogenesis protein CcdA, at 2,635,219 to 2,636,046 _RS14170 Position (kb) 2633 2634 2635Strain fitness (log2 ratio) -1 0 1 2at 2633.535 kb on + strandat 2633.576 kb on + strandat 2633.718 kb on - strandat 2633.764 kb on - strandat 2634.127 kb on + strand, within SGL_RS14160at 2634.127 kb on + strand, within SGL_RS14160at 2634.235 kb on - strand, within SGL_RS14160at 2634.367 kb on - strand, within SGL_RS14160at 2634.462 kb on - strand, within SGL_RS14160at 2634.485 kb on - strand, within SGL_RS14160at 2634.510 kb on - strand, within SGL_RS14160at 2634.571 kb on - strand, within SGL_RS14160at 2634.648 kb on - strandat 2634.781 kb on - strand, within SGL_RS14165at 2634.833 kb on - strand, within SGL_RS14165at 2634.927 kb on - strand, within SGL_RS14165at 2634.945 kb on + strand, within SGL_RS14165at 2635.013 kb on + strand, within SGL_RS14165at 2635.020 kb on + strand, within SGL_RS14165at 2635.234 kb on - strandat 2635.360 kb on + strand, within SGL_RS14170at 2635.386 kb on - strand, within SGL_RS14170

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
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2,633,535 + -0.7
2,633,576 + -0.3
2,633,718 - -0.8
2,633,764 - +0.6
2,634,127 + SGL_RS14160 0.34 +2.3
2,634,127 + SGL_RS14160 0.34 +1.0
2,634,235 - SGL_RS14160 0.48 +2.0
2,634,367 - SGL_RS14160 0.64 -0.4
2,634,462 - SGL_RS14160 0.76 +0.2
2,634,485 - SGL_RS14160 0.79 +0.4
2,634,510 - SGL_RS14160 0.82 +2.0
2,634,571 - SGL_RS14160 0.89 +2.5
2,634,648 - +1.3
2,634,781 - SGL_RS14165 0.22 +0.1
2,634,833 - SGL_RS14165 0.31 +0.6
2,634,927 - SGL_RS14165 0.48 +0.7
2,634,945 + SGL_RS14165 0.51 +0.1
2,635,013 + SGL_RS14165 0.63 +0.3
2,635,020 + SGL_RS14165 0.65 +0.1
2,635,234 - -0.2
2,635,360 + SGL_RS14170 0.17 +0.3
2,635,386 - SGL_RS14170 0.20 -0.1

Or see this region's nucleotide sequence