Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13220

Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13210 and SGL_RS13215 are separated by 127 nucleotidesSGL_RS13215 and SGL_RS19625 are separated by 36 nucleotidesSGL_RS19625 and SGL_RS13220 are separated by 6 nucleotidesSGL_RS13220 and SGL_RS13225 are separated by 20 nucleotides SGL_RS13210: SGL_RS13210 - glycosyltransferase, at 2,429,543 to 2,430,964 _RS13210 SGL_RS13215: SGL_RS13215 - SxtJ family membrane protein, at 2,431,092 to 2,431,499 _RS13215 SGL_RS19625: SGL_RS19625 - DUF5989 family protein, at 2,431,536 to 2,431,697 _RS19625 SGL_RS13220: SGL_RS13220 - ribonuclease III, at 2,431,704 to 2,432,438 _RS13220 SGL_RS13225: SGL_RS13225 - carbamoyltransferase HypF, at 2,432,459 to 2,434,762 _RS13225 Position (kb) 2431 2432 2433Strain fitness (log2 ratio) -1 0 1 2at 2431.189 kb on - strand, within SGL_RS13215at 2431.285 kb on - strand, within SGL_RS13215at 2431.803 kb on + strand, within SGL_RS13220at 2431.816 kb on - strand, within SGL_RS13220at 2431.875 kb on + strand, within SGL_RS13220at 2431.909 kb on - strand, within SGL_RS13220at 2431.924 kb on - strand, within SGL_RS13220at 2431.970 kb on - strand, within SGL_RS13220at 2432.003 kb on - strand, within SGL_RS13220at 2432.080 kb on - strand, within SGL_RS13220at 2432.084 kb on + strand, within SGL_RS13220at 2432.092 kb on + strand, within SGL_RS13220at 2432.092 kb on - strand, within SGL_RS13220at 2432.868 kb on - strand, within SGL_RS13225

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
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2,431,189 - SGL_RS13215 0.24 +0.4
2,431,285 - SGL_RS13215 0.47 -0.2
2,431,803 + SGL_RS13220 0.13 +1.1
2,431,816 - SGL_RS13220 0.15 +1.9
2,431,875 + SGL_RS13220 0.23 +0.2
2,431,909 - SGL_RS13220 0.28 +0.3
2,431,924 - SGL_RS13220 0.30 +0.3
2,431,970 - SGL_RS13220 0.36 +0.5
2,432,003 - SGL_RS13220 0.41 +0.7
2,432,080 - SGL_RS13220 0.51 +1.0
2,432,084 + SGL_RS13220 0.52 +1.1
2,432,092 + SGL_RS13220 0.53 +0.7
2,432,092 - SGL_RS13220 0.53 +0.5
2,432,868 - SGL_RS13225 0.18 +0.2

Or see this region's nucleotide sequence