Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12205

Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12200 and SGL_RS12205 are separated by 187 nucleotidesSGL_RS12205 and SGL_RS12210 are separated by 393 nucleotides SGL_RS12200: SGL_RS12200 - efflux RND transporter permease subunit, at 2,197,732 to 2,200,959 _RS12200 SGL_RS12205: SGL_RS12205 - efflux RND transporter periplasmic adaptor subunit, at 2,201,147 to 2,202,550 _RS12205 SGL_RS12210: SGL_RS12210 - type IV pilus twitching motility protein PilT, at 2,202,944 to 2,204,053 _RS12210 Position (kb) 2201 2202 2203Strain fitness (log2 ratio) -1 0 1at 2200.255 kb on + strand, within SGL_RS12200at 2200.255 kb on + strand, within SGL_RS12200at 2200.263 kb on - strand, within SGL_RS12200at 2200.263 kb on - strand, within SGL_RS12200at 2200.607 kb on - strand, within SGL_RS12200at 2200.608 kb on - strand, within SGL_RS12200at 2200.629 kb on - strand, within SGL_RS12200at 2200.898 kb on - strandat 2200.898 kb on - strandat 2201.064 kb on + strandat 2201.205 kb on - strandat 2201.324 kb on - strand, within SGL_RS12205at 2201.419 kb on - strand, within SGL_RS12205at 2201.749 kb on + strand, within SGL_RS12205at 2201.749 kb on + strand, within SGL_RS12205at 2201.769 kb on + strand, within SGL_RS12205at 2201.774 kb on + strand, within SGL_RS12205at 2201.782 kb on - strand, within SGL_RS12205at 2201.873 kb on - strand, within SGL_RS12205at 2201.897 kb on + strand, within SGL_RS12205at 2201.900 kb on - strand, within SGL_RS12205at 2202.004 kb on - strand, within SGL_RS12205at 2202.085 kb on - strand, within SGL_RS12205at 2202.087 kb on + strand, within SGL_RS12205at 2202.113 kb on + strand, within SGL_RS12205at 2202.121 kb on - strand, within SGL_RS12205at 2202.157 kb on - strand, within SGL_RS12205at 2202.182 kb on + strand, within SGL_RS12205at 2202.192 kb on + strand, within SGL_RS12205at 2202.192 kb on + strand, within SGL_RS12205at 2202.386 kb on + strand, within SGL_RS12205at 2202.397 kb on + strand, within SGL_RS12205at 2202.399 kb on - strand, within SGL_RS12205at 2202.413 kb on - strandat 2202.615 kb on - strandat 2202.931 kb on - strandat 2202.948 kb on - strandat 2202.971 kb on - strandat 2203.061 kb on - strand, within SGL_RS12210at 2203.200 kb on + strand, within SGL_RS12210at 2203.296 kb on - strand, within SGL_RS12210at 2203.410 kb on - strand, within SGL_RS12210

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
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2,200,255 + SGL_RS12200 0.78 +0.8
2,200,255 + SGL_RS12200 0.78 +1.5
2,200,263 - SGL_RS12200 0.78 +0.8
2,200,263 - SGL_RS12200 0.78 +1.1
2,200,607 - SGL_RS12200 0.89 +1.0
2,200,608 - SGL_RS12200 0.89 +1.1
2,200,629 - SGL_RS12200 0.90 +0.7
2,200,898 - +1.0
2,200,898 - +1.3
2,201,064 + +0.1
2,201,205 - +1.1
2,201,324 - SGL_RS12205 0.13 +1.1
2,201,419 - SGL_RS12205 0.19 +0.7
2,201,749 + SGL_RS12205 0.43 +1.2
2,201,749 + SGL_RS12205 0.43 +0.7
2,201,769 + SGL_RS12205 0.44 +0.9
2,201,774 + SGL_RS12205 0.45 +1.3
2,201,782 - SGL_RS12205 0.45 +0.9
2,201,873 - SGL_RS12205 0.52 +1.1
2,201,897 + SGL_RS12205 0.53 +0.6
2,201,900 - SGL_RS12205 0.54 +1.0
2,202,004 - SGL_RS12205 0.61 +0.3
2,202,085 - SGL_RS12205 0.67 +1.1
2,202,087 + SGL_RS12205 0.67 +0.8
2,202,113 + SGL_RS12205 0.69 +0.4
2,202,121 - SGL_RS12205 0.69 +0.8
2,202,157 - SGL_RS12205 0.72 +0.8
2,202,182 + SGL_RS12205 0.74 +0.8
2,202,192 + SGL_RS12205 0.74 +0.7
2,202,192 + SGL_RS12205 0.74 +0.4
2,202,386 + SGL_RS12205 0.88 +1.3
2,202,397 + SGL_RS12205 0.89 +0.8
2,202,399 - SGL_RS12205 0.89 +0.0
2,202,413 - +0.7
2,202,615 - +0.4
2,202,931 - +0.5
2,202,948 - +0.0
2,202,971 - +1.6
2,203,061 - SGL_RS12210 0.11 +1.0
2,203,200 + SGL_RS12210 0.23 +1.4
2,203,296 - SGL_RS12210 0.32 +0.7
2,203,410 - SGL_RS12210 0.42 +1.6

Or see this region's nucleotide sequence