Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11075

Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11070 and SGL_RS19610 are separated by 30 nucleotidesSGL_RS19610 and SGL_RS11075 are separated by 64 nucleotidesSGL_RS11075 and SGL_RS11080 are separated by 143 nucleotides SGL_RS11070: SGL_RS11070 - DUF2330 domain-containing protein, at 1,942,923 to 1,944,314 _RS11070 SGL_RS19610: SGL_RS19610 - hypothetical protein, at 1,944,345 to 1,944,521 _RS19610 SGL_RS11075: SGL_RS11075 - ABC-2 family transporter protein, at 1,944,586 to 1,945,374 _RS11075 SGL_RS11080: SGL_RS11080 - glycerol-3-phosphate dehydrogenase, at 1,945,518 to 1,947,179 _RS11080 Position (kb) 1944 1945 1946Strain fitness (log2 ratio) -1 0 1at 1943.691 kb on + strand, within SGL_RS11070at 1943.803 kb on - strand, within SGL_RS11070at 1943.828 kb on - strand, within SGL_RS11070at 1943.860 kb on + strand, within SGL_RS11070at 1943.878 kb on + strand, within SGL_RS11070at 1943.886 kb on - strand, within SGL_RS11070at 1943.944 kb on - strand, within SGL_RS11070at 1943.951 kb on + strand, within SGL_RS11070at 1943.951 kb on + strand, within SGL_RS11070at 1943.956 kb on + strand, within SGL_RS11070at 1943.963 kb on + strand, within SGL_RS11070at 1943.995 kb on - strand, within SGL_RS11070at 1944.035 kb on - strand, within SGL_RS11070at 1944.431 kb on - strand, within SGL_RS19610at 1944.459 kb on + strand, within SGL_RS19610at 1944.542 kb on - strandat 1944.572 kb on - strandat 1944.933 kb on + strand, within SGL_RS11075at 1944.991 kb on - strand, within SGL_RS11075at 1945.109 kb on - strand, within SGL_RS11075at 1945.109 kb on - strand, within SGL_RS11075at 1945.162 kb on + strand, within SGL_RS11075at 1945.170 kb on - strand, within SGL_RS11075at 1945.175 kb on + strand, within SGL_RS11075at 1945.325 kb on - strandat 1945.801 kb on + strand, within SGL_RS11080at 1945.960 kb on - strand, within SGL_RS11080at 1945.972 kb on - strand, within SGL_RS11080at 1945.995 kb on - strand, within SGL_RS11080at 1945.995 kb on - strand, within SGL_RS11080at 1945.995 kb on - strand, within SGL_RS11080at 1946.113 kb on - strand, within SGL_RS11080at 1946.134 kb on + strand, within SGL_RS11080at 1946.134 kb on + strand, within SGL_RS11080at 1946.134 kb on + strand, within SGL_RS11080at 1946.142 kb on - strand, within SGL_RS11080at 1946.258 kb on - strand, within SGL_RS11080at 1946.260 kb on - strand, within SGL_RS11080at 1946.369 kb on - strand, within SGL_RS11080

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
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1,943,691 + SGL_RS11070 0.55 -0.8
1,943,803 - SGL_RS11070 0.63 -0.4
1,943,828 - SGL_RS11070 0.65 -0.1
1,943,860 + SGL_RS11070 0.67 -0.0
1,943,878 + SGL_RS11070 0.69 -0.6
1,943,886 - SGL_RS11070 0.69 -0.5
1,943,944 - SGL_RS11070 0.73 -0.3
1,943,951 + SGL_RS11070 0.74 -0.5
1,943,951 + SGL_RS11070 0.74 -0.3
1,943,956 + SGL_RS11070 0.74 -0.6
1,943,963 + SGL_RS11070 0.75 -0.5
1,943,995 - SGL_RS11070 0.77 -0.4
1,944,035 - SGL_RS11070 0.80 -1.6
1,944,431 - SGL_RS19610 0.49 +0.6
1,944,459 + SGL_RS19610 0.64 -0.1
1,944,542 - +0.4
1,944,572 - -0.2
1,944,933 + SGL_RS11075 0.44 +1.1
1,944,991 - SGL_RS11075 0.51 +0.7
1,945,109 - SGL_RS11075 0.66 +1.2
1,945,109 - SGL_RS11075 0.66 +0.7
1,945,162 + SGL_RS11075 0.73 +0.2
1,945,170 - SGL_RS11075 0.74 +0.3
1,945,175 + SGL_RS11075 0.75 +0.4
1,945,325 - +0.6
1,945,801 + SGL_RS11080 0.17 +1.0
1,945,960 - SGL_RS11080 0.27 -0.1
1,945,972 - SGL_RS11080 0.27 -0.1
1,945,995 - SGL_RS11080 0.29 -0.2
1,945,995 - SGL_RS11080 0.29 +0.3
1,945,995 - SGL_RS11080 0.29 +0.2
1,946,113 - SGL_RS11080 0.36 -0.2
1,946,134 + SGL_RS11080 0.37 -0.2
1,946,134 + SGL_RS11080 0.37 -0.1
1,946,134 + SGL_RS11080 0.37 +0.2
1,946,142 - SGL_RS11080 0.38 -0.3
1,946,258 - SGL_RS11080 0.45 +0.4
1,946,260 - SGL_RS11080 0.45 -0.6
1,946,369 - SGL_RS11080 0.51 -0.2

Or see this region's nucleotide sequence