Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09935

Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09925 and SGL_RS09930 overlap by 4 nucleotidesSGL_RS09930 and SGL_RS09935 are separated by 77 nucleotidesSGL_RS09935 and SGL_RS09940 are separated by 145 nucleotides SGL_RS09925: SGL_RS09925 - apolipoprotein N-acyltransferase, at 1,707,317 to 1,708,876 _RS09925 SGL_RS09930: SGL_RS09930 - glutaredoxin family protein, at 1,708,873 to 1,709,154 _RS09930 SGL_RS09935: SGL_RS09935 - sugar transferase, at 1,709,232 to 1,710,668 _RS09935 SGL_RS09940: SGL_RS09940 - IS630 transposase-related protein, at 1,710,814 to 1,711,659 _RS09940 Position (kb) 1709 1710 1711Strain fitness (log2 ratio) -1 0 1 2 3at 1708.264 kb on + strand, within SGL_RS09925at 1708.278 kb on - strand, within SGL_RS09925at 1708.307 kb on + strand, within SGL_RS09925at 1708.376 kb on - strand, within SGL_RS09925at 1708.420 kb on + strand, within SGL_RS09925at 1708.428 kb on - strand, within SGL_RS09925at 1708.477 kb on - strand, within SGL_RS09925at 1708.525 kb on + strand, within SGL_RS09925at 1708.535 kb on + strand, within SGL_RS09925at 1708.537 kb on + strand, within SGL_RS09925at 1708.545 kb on - strand, within SGL_RS09925at 1708.577 kb on + strand, within SGL_RS09925at 1708.577 kb on + strand, within SGL_RS09925at 1708.601 kb on + strand, within SGL_RS09925at 1708.601 kb on + strand, within SGL_RS09925at 1708.601 kb on + strand, within SGL_RS09925at 1708.609 kb on - strand, within SGL_RS09925at 1708.783 kb on - strandat 1708.860 kb on + strandat 1708.998 kb on + strand, within SGL_RS09930at 1709.174 kb on + strandat 1709.308 kb on - strandat 1709.377 kb on - strand, within SGL_RS09935at 1709.505 kb on + strand, within SGL_RS09935at 1709.513 kb on - strand, within SGL_RS09935at 1709.525 kb on - strand, within SGL_RS09935at 1709.558 kb on + strand, within SGL_RS09935at 1709.561 kb on - strand, within SGL_RS09935at 1709.692 kb on + strand, within SGL_RS09935at 1709.704 kb on + strand, within SGL_RS09935at 1709.707 kb on - strand, within SGL_RS09935at 1709.755 kb on + strand, within SGL_RS09935at 1709.775 kb on - strand, within SGL_RS09935at 1709.817 kb on + strand, within SGL_RS09935at 1709.817 kb on + strand, within SGL_RS09935at 1709.827 kb on + strand, within SGL_RS09935at 1709.830 kb on - strand, within SGL_RS09935at 1709.840 kb on + strand, within SGL_RS09935at 1709.902 kb on - strand, within SGL_RS09935at 1709.922 kb on + strand, within SGL_RS09935at 1709.956 kb on + strand, within SGL_RS09935at 1710.069 kb on - strand, within SGL_RS09935at 1710.276 kb on + strand, within SGL_RS09935at 1710.431 kb on + strand, within SGL_RS09935at 1710.431 kb on + strand, within SGL_RS09935at 1710.439 kb on - strand, within SGL_RS09935at 1710.444 kb on - strand, within SGL_RS09935at 1710.456 kb on + strand, within SGL_RS09935at 1710.464 kb on + strand, within SGL_RS09935at 1710.566 kb on - strandat 1711.572 kb on + strand, within SGL_RS09940

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
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1,708,264 + SGL_RS09925 0.61 +2.7
1,708,278 - SGL_RS09925 0.62 +2.6
1,708,307 + SGL_RS09925 0.63 +2.5
1,708,376 - SGL_RS09925 0.68 +2.6
1,708,420 + SGL_RS09925 0.71 +2.5
1,708,428 - SGL_RS09925 0.71 +2.8
1,708,477 - SGL_RS09925 0.74 +2.4
1,708,525 + SGL_RS09925 0.77 +3.2
1,708,535 + SGL_RS09925 0.78 +2.8
1,708,537 + SGL_RS09925 0.78 +2.9
1,708,545 - SGL_RS09925 0.79 +2.5
1,708,577 + SGL_RS09925 0.81 +3.0
1,708,577 + SGL_RS09925 0.81 +3.5
1,708,601 + SGL_RS09925 0.82 +2.5
1,708,601 + SGL_RS09925 0.82 +2.7
1,708,601 + SGL_RS09925 0.82 +2.7
1,708,609 - SGL_RS09925 0.83 +2.4
1,708,783 - +2.6
1,708,860 + +0.3
1,708,998 + SGL_RS09930 0.44 -0.7
1,709,174 + +0.3
1,709,308 - +0.7
1,709,377 - SGL_RS09935 0.10 +0.7
1,709,505 + SGL_RS09935 0.19 +0.9
1,709,513 - SGL_RS09935 0.20 -0.1
1,709,525 - SGL_RS09935 0.20 +0.8
1,709,558 + SGL_RS09935 0.23 +0.5
1,709,561 - SGL_RS09935 0.23 +0.6
1,709,692 + SGL_RS09935 0.32 +0.8
1,709,704 + SGL_RS09935 0.33 +0.9
1,709,707 - SGL_RS09935 0.33 +1.1
1,709,755 + SGL_RS09935 0.36 +1.0
1,709,775 - SGL_RS09935 0.38 +0.6
1,709,817 + SGL_RS09935 0.41 +0.8
1,709,817 + SGL_RS09935 0.41 +1.3
1,709,827 + SGL_RS09935 0.41 +0.9
1,709,830 - SGL_RS09935 0.42 +1.0
1,709,840 + SGL_RS09935 0.42 +0.8
1,709,902 - SGL_RS09935 0.47 +1.0
1,709,922 + SGL_RS09935 0.48 +0.7
1,709,956 + SGL_RS09935 0.50 +1.5
1,710,069 - SGL_RS09935 0.58 +1.4
1,710,276 + SGL_RS09935 0.73 +0.9
1,710,431 + SGL_RS09935 0.83 -1.4
1,710,431 + SGL_RS09935 0.83 +2.1
1,710,439 - SGL_RS09935 0.84 +0.9
1,710,444 - SGL_RS09935 0.84 +0.9
1,710,456 + SGL_RS09935 0.85 +1.3
1,710,464 + SGL_RS09935 0.86 +0.3
1,710,566 - +0.7
1,711,572 + SGL_RS09940 0.90 +0.0

Or see this region's nucleotide sequence