Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07750

Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07740 and SGL_RS07745 are separated by 97 nucleotidesSGL_RS07745 and SGL_RS07750 are separated by 84 nucleotidesSGL_RS07750 and SGL_RS07755 are separated by 153 nucleotides SGL_RS07740: SGL_RS07740 - RNA polymerase sigma factor, RpoD/SigA family, at 1,254,783 to 1,255,739 _RS07740 SGL_RS07745: SGL_RS07745 - hypothetical protein, at 1,255,837 to 1,256,040 _RS07745 SGL_RS07750: SGL_RS07750 - 7-carboxy-7-deazaguanine synthase QueE, at 1,256,125 to 1,256,751 _RS07750 SGL_RS07755: SGL_RS07755 - UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, at 1,256,905 to 1,258,263 _RS07755 Position (kb) 1256 1257Strain fitness (log2 ratio) -1 0 1 2 3at 1255.467 kb on - strand, within SGL_RS07740at 1255.737 kb on + strandat 1256.159 kb on + strandat 1256.367 kb on + strand, within SGL_RS07750at 1256.379 kb on + strand, within SGL_RS07750at 1256.387 kb on - strand, within SGL_RS07750at 1256.459 kb on + strand, within SGL_RS07750at 1256.470 kb on + strand, within SGL_RS07750at 1256.480 kb on - strand, within SGL_RS07750at 1256.480 kb on - strand, within SGL_RS07750at 1256.487 kb on - strand, within SGL_RS07750at 1256.501 kb on + strand, within SGL_RS07750at 1256.583 kb on - strand, within SGL_RS07750at 1256.588 kb on - strand, within SGL_RS07750at 1256.606 kb on + strand, within SGL_RS07750at 1256.677 kb on + strand, within SGL_RS07750at 1256.685 kb on - strand, within SGL_RS07750at 1256.716 kb on - strandat 1256.721 kb on - strandat 1256.801 kb on + strandat 1256.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
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1,255,467 - SGL_RS07740 0.71 -1.2
1,255,737 + -1.1
1,256,159 + +1.2
1,256,367 + SGL_RS07750 0.39 +1.2
1,256,379 + SGL_RS07750 0.41 +0.7
1,256,387 - SGL_RS07750 0.42 +0.8
1,256,459 + SGL_RS07750 0.53 +0.6
1,256,470 + SGL_RS07750 0.55 +0.7
1,256,480 - SGL_RS07750 0.57 +3.6
1,256,480 - SGL_RS07750 0.57 +0.1
1,256,487 - SGL_RS07750 0.58 +0.1
1,256,501 + SGL_RS07750 0.60 +0.9
1,256,583 - SGL_RS07750 0.73 +1.2
1,256,588 - SGL_RS07750 0.74 -1.2
1,256,606 + SGL_RS07750 0.77 +0.3
1,256,677 + SGL_RS07750 0.88 +0.5
1,256,685 - SGL_RS07750 0.89 +1.0
1,256,716 - +0.5
1,256,721 - +0.7
1,256,801 + +0.7
1,256,905 - -0.2

Or see this region's nucleotide sequence