Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05070

Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05065 and SGL_RS05070 overlap by 11 nucleotidesSGL_RS05070 and SGL_RS05075 are separated by 120 nucleotides SGL_RS05065: SGL_RS05065 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 683,140 to 684,153 _RS05065 SGL_RS05070: SGL_RS05070 - 2Fe-2S iron-sulfur cluster-binding protein, at 684,143 to 684,439 _RS05070 SGL_RS05075: SGL_RS05075 - hybrid sensor histidine kinase/response regulator, at 684,560 to 687,334 _RS05075 Position (kb) 684 685Strain fitness (log2 ratio) -1 0 1at 684.308 kb on + strand, within SGL_RS05070at 684.316 kb on - strand, within SGL_RS05070at 684.316 kb on - strand, within SGL_RS05070at 684.624 kb on + strandat 684.685 kb on + strandat 684.693 kb on + strandat 684.714 kb on - strandat 684.759 kb on - strandat 684.827 kb on + strandat 684.827 kb on + strandat 684.930 kb on + strand, within SGL_RS05075at 685.127 kb on + strand, within SGL_RS05075at 685.139 kb on + strand, within SGL_RS05075at 685.142 kb on - strand, within SGL_RS05075at 685.182 kb on - strand, within SGL_RS05075

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
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684,308 + SGL_RS05070 0.56 +0.2
684,316 - SGL_RS05070 0.58 +1.0
684,316 - SGL_RS05070 0.58 +0.7
684,624 + +0.3
684,685 + -0.6
684,693 + +0.2
684,714 - -0.1
684,759 - -0.0
684,827 + -0.1
684,827 + +0.2
684,930 + SGL_RS05075 0.13 +0.3
685,127 + SGL_RS05075 0.20 -0.2
685,139 + SGL_RS05075 0.21 +0.6
685,142 - SGL_RS05075 0.21 +0.8
685,182 - SGL_RS05075 0.22 -0.5

Or see this region's nucleotide sequence