Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS20140

Experiment: growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07890 and SGL_RS07895 overlap by 32 nucleotidesSGL_RS07895 and SGL_RS20140 are separated by 29 nucleotidesSGL_RS20140 and SGL_RS07900 are separated by 115 nucleotides SGL_RS07890: SGL_RS07890 - ABC transporter substrate-binding protein, at 1,286,868 to 1,288,763 _RS07890 SGL_RS07895: SGL_RS07895 - hypothetical protein, at 1,288,732 to 1,289,112 _RS07895 SGL_RS20140: SGL_RS20140 - hypothetical protein, at 1,289,142 to 1,289,273 _RS20140 SGL_RS07900: SGL_RS07900 - DUF362 domain-containing protein, at 1,289,389 to 1,290,354 _RS07900 Position (kb) 1289 1290Strain fitness (log2 ratio) -2 -1 0 1at 1288.166 kb on - strand, within SGL_RS07890at 1288.355 kb on + strand, within SGL_RS07890at 1288.382 kb on + strand, within SGL_RS07890at 1288.390 kb on - strand, within SGL_RS07890at 1288.488 kb on - strand, within SGL_RS07890at 1288.782 kb on + strand, within SGL_RS07895at 1288.949 kb on + strand, within SGL_RS07895at 1289.017 kb on + strand, within SGL_RS07895at 1289.025 kb on - strand, within SGL_RS07895at 1289.050 kb on - strand, within SGL_RS07895at 1289.116 kb on - strandat 1289.223 kb on + strand, within SGL_RS20140at 1289.223 kb on + strand, within SGL_RS20140at 1289.231 kb on - strand, within SGL_RS20140at 1289.473 kb on - strandat 1289.473 kb on - strandat 1289.473 kb on - strandat 1289.538 kb on - strand, within SGL_RS07900at 1289.556 kb on - strand, within SGL_RS07900at 1289.588 kb on - strand, within SGL_RS07900at 1289.600 kb on + strand, within SGL_RS07900at 1289.743 kb on - strand, within SGL_RS07900at 1289.829 kb on + strand, within SGL_RS07900at 1289.893 kb on - strand, within SGL_RS07900at 1289.968 kb on + strand, within SGL_RS07900at 1290.032 kb on - strand, within SGL_RS07900at 1290.034 kb on + strand, within SGL_RS07900at 1290.042 kb on - strand, within SGL_RS07900at 1290.143 kb on + strand, within SGL_RS07900at 1290.220 kb on - strand, within SGL_RS07900at 1290.263 kb on + strandat 1290.265 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation
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1,288,166 - SGL_RS07890 0.68 -0.3
1,288,355 + SGL_RS07890 0.78 -1.8
1,288,382 + SGL_RS07890 0.80 -1.1
1,288,390 - SGL_RS07890 0.80 -0.6
1,288,488 - SGL_RS07890 0.85 -0.1
1,288,782 + SGL_RS07895 0.13 -0.5
1,288,949 + SGL_RS07895 0.57 +0.4
1,289,017 + SGL_RS07895 0.75 -0.6
1,289,025 - SGL_RS07895 0.77 -0.3
1,289,050 - SGL_RS07895 0.83 -0.6
1,289,116 - -0.1
1,289,223 + SGL_RS20140 0.61 +0.1
1,289,223 + SGL_RS20140 0.61 -0.6
1,289,231 - SGL_RS20140 0.67 -0.4
1,289,473 - -0.3
1,289,473 - -0.1
1,289,473 - -1.1
1,289,538 - SGL_RS07900 0.15 -0.3
1,289,556 - SGL_RS07900 0.17 -0.2
1,289,588 - SGL_RS07900 0.21 -1.1
1,289,600 + SGL_RS07900 0.22 +0.5
1,289,743 - SGL_RS07900 0.37 -0.3
1,289,829 + SGL_RS07900 0.46 -0.0
1,289,893 - SGL_RS07900 0.52 -0.5
1,289,968 + SGL_RS07900 0.60 -0.4
1,290,032 - SGL_RS07900 0.67 +0.4
1,290,034 + SGL_RS07900 0.67 -0.3
1,290,042 - SGL_RS07900 0.68 +0.8
1,290,143 + SGL_RS07900 0.78 -0.2
1,290,220 - SGL_RS07900 0.86 +0.3
1,290,263 + -0.2
1,290,265 + -0.5

Or see this region's nucleotide sequence