Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17370

Experiment: growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17365 and SGL_RS17370 are separated by 328 nucleotidesSGL_RS17370 and SGL_RS17375 overlap by 8 nucleotidesSGL_RS17375 and SGL_RS19285 are separated by 141 nucleotidesSGL_RS19285 and SGL_RS17380 are separated by 159 nucleotides SGL_RS17365: SGL_RS17365 - hypothetical protein, at 3,351,526 to 3,352,353 _RS17365 SGL_RS17370: SGL_RS17370 - hypothetical protein, at 3,352,682 to 3,353,203 _RS17370 SGL_RS17375: SGL_RS17375 - hypothetical protein, at 3,353,196 to 3,353,732 _RS17375 SGL_RS19285: SGL_RS19285 - hypothetical protein, at 3,353,874 to 3,354,032 _RS19285 SGL_RS17380: SGL_RS17380 - glutamate synthase large subunit, at 3,354,192 to 3,358,862 _RS17380 Position (kb) 3352 3353 3354Strain fitness (log2 ratio) -1 0 1at 3351.910 kb on - strand, within SGL_RS17365at 3352.074 kb on + strand, within SGL_RS17365at 3352.241 kb on - strand, within SGL_RS17365at 3352.487 kb on + strandat 3352.850 kb on - strand, within SGL_RS17370at 3353.868 kb on + strandat 3354.167 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation
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3,351,910 - SGL_RS17365 0.46 -0.1
3,352,074 + SGL_RS17365 0.66 +0.0
3,352,241 - SGL_RS17365 0.86 -0.3
3,352,487 + +0.2
3,352,850 - SGL_RS17370 0.32 -1.2
3,353,868 + +0.7
3,354,167 + -0.4

Or see this region's nucleotide sequence