Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14965

Experiment: growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14960 and SGL_RS14965 are separated by 310 nucleotidesSGL_RS14965 and SGL_RS14970 are separated by 34 nucleotidesSGL_RS14970 and SGL_RS14975 are separated by 94 nucleotides SGL_RS14960: SGL_RS14960 - PHP domain-containing protein, at 2,809,055 to 2,809,804 _RS14960 SGL_RS14965: SGL_RS14965 - DUF2779 domain-containing protein, at 2,810,115 to 2,811,593 _RS14965 SGL_RS14970: SGL_RS14970 - hypothetical protein, at 2,811,628 to 2,812,290 _RS14970 SGL_RS14975: SGL_RS14975 - translation initiation factor, at 2,812,385 to 2,812,720 _RS14975 Position (kb) 2810 2811 2812Strain fitness (log2 ratio) -2 -1 0 1 2at 2809.274 kb on + strand, within SGL_RS14960at 2809.282 kb on + strand, within SGL_RS14960at 2809.370 kb on + strand, within SGL_RS14960at 2809.378 kb on - strand, within SGL_RS14960at 2809.405 kb on - strand, within SGL_RS14960at 2809.417 kb on + strand, within SGL_RS14960at 2809.425 kb on - strand, within SGL_RS14960at 2809.513 kb on - strand, within SGL_RS14960at 2809.541 kb on - strand, within SGL_RS14960at 2809.587 kb on + strand, within SGL_RS14960at 2809.795 kb on - strandat 2809.854 kb on + strandat 2809.964 kb on - strandat 2810.088 kb on + strandat 2810.151 kb on + strandat 2810.159 kb on - strandat 2810.205 kb on + strandat 2810.346 kb on - strand, within SGL_RS14965at 2810.353 kb on - strand, within SGL_RS14965at 2810.416 kb on + strand, within SGL_RS14965at 2810.516 kb on + strand, within SGL_RS14965at 2810.590 kb on - strand, within SGL_RS14965at 2810.653 kb on - strand, within SGL_RS14965at 2810.738 kb on + strand, within SGL_RS14965at 2811.026 kb on + strand, within SGL_RS14965at 2811.125 kb on - strand, within SGL_RS14965at 2811.154 kb on + strand, within SGL_RS14965at 2811.172 kb on - strand, within SGL_RS14965at 2811.252 kb on - strand, within SGL_RS14965at 2811.436 kb on - strand, within SGL_RS14965at 2811.466 kb on - strandat 2811.647 kb on + strandat 2811.648 kb on + strandat 2811.826 kb on + strand, within SGL_RS14970at 2811.902 kb on + strand, within SGL_RS14970at 2811.968 kb on + strand, within SGL_RS14970at 2811.976 kb on - strand, within SGL_RS14970at 2812.062 kb on + strand, within SGL_RS14970at 2812.186 kb on + strand, within SGL_RS14970at 2812.240 kb on - strandat 2812.506 kb on - strand, within SGL_RS14975

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation
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2,809,274 + SGL_RS14960 0.29 -1.0
2,809,282 + SGL_RS14960 0.30 -0.6
2,809,370 + SGL_RS14960 0.42 +0.8
2,809,378 - SGL_RS14960 0.43 -0.7
2,809,405 - SGL_RS14960 0.47 -0.3
2,809,417 + SGL_RS14960 0.48 -0.3
2,809,425 - SGL_RS14960 0.49 -1.2
2,809,513 - SGL_RS14960 0.61 -0.3
2,809,541 - SGL_RS14960 0.65 -0.4
2,809,587 + SGL_RS14960 0.71 -0.5
2,809,795 - -0.1
2,809,854 + -0.4
2,809,964 - -1.2
2,810,088 + -1.2
2,810,151 + -2.5
2,810,159 - -1.3
2,810,205 + -0.8
2,810,346 - SGL_RS14965 0.16 -1.3
2,810,353 - SGL_RS14965 0.16 -1.5
2,810,416 + SGL_RS14965 0.20 -1.7
2,810,516 + SGL_RS14965 0.27 -1.4
2,810,590 - SGL_RS14965 0.32 -1.2
2,810,653 - SGL_RS14965 0.36 -0.4
2,810,738 + SGL_RS14965 0.42 -1.6
2,811,026 + SGL_RS14965 0.62 -1.5
2,811,125 - SGL_RS14965 0.68 -2.1
2,811,154 + SGL_RS14965 0.70 -1.0
2,811,172 - SGL_RS14965 0.71 -1.1
2,811,252 - SGL_RS14965 0.77 -0.1
2,811,436 - SGL_RS14965 0.89 -1.1
2,811,466 - -1.7
2,811,647 + -0.8
2,811,648 + +1.1
2,811,826 + SGL_RS14970 0.30 +2.6
2,811,902 + SGL_RS14970 0.41 -0.2
2,811,968 + SGL_RS14970 0.51 +0.1
2,811,976 - SGL_RS14970 0.52 +1.3
2,812,062 + SGL_RS14970 0.65 +0.2
2,812,186 + SGL_RS14970 0.84 -0.3
2,812,240 - -0.1
2,812,506 - SGL_RS14975 0.36 +0.3

Or see this region's nucleotide sequence