Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13245

Experiment: growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13235 and SGL_RS13240 are separated by 6 nucleotidesSGL_RS13240 and SGL_RS13245 are separated by 33 nucleotidesSGL_RS13245 and SGL_RS13250 are separated by 312 nucleotides SGL_RS13235: SGL_RS13235 - ABC transporter permease, at 2,436,443 to 2,437,228 _RS13235 SGL_RS13240: SGL_RS13240 - ribonuclease D, at 2,437,235 to 2,437,888 _RS13240 SGL_RS13245: SGL_RS13245 - DUF3747 domain-containing protein, at 2,437,922 to 2,438,779 _RS13245 SGL_RS13250: SGL_RS13250 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 2,439,092 to 2,440,312 _RS13250 Position (kb) 2437 2438 2439Strain fitness (log2 ratio) -2 -1 0 1at 2437.005 kb on - strand, within SGL_RS13235at 2437.184 kb on - strandat 2438.054 kb on - strand, within SGL_RS13245at 2438.062 kb on - strand, within SGL_RS13245at 2438.096 kb on + strand, within SGL_RS13245at 2438.159 kb on + strand, within SGL_RS13245at 2438.952 kb on + strandat 2438.975 kb on + strandat 2438.983 kb on - strandat 2438.983 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation
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2,437,005 - SGL_RS13235 0.72 -0.1
2,437,184 - +0.5
2,438,054 - SGL_RS13245 0.15 -1.8
2,438,062 - SGL_RS13245 0.16 -1.9
2,438,096 + SGL_RS13245 0.20 -0.5
2,438,159 + SGL_RS13245 0.28 -2.1
2,438,952 + -0.0
2,438,975 + +0.0
2,438,983 - +0.8
2,438,983 - -0.2

Or see this region's nucleotide sequence